Publications
Our instruments have been featured and mentioned in several publications over the years. Choose a product tab below to explore our expanding library.
ChronosFD
Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)
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Cotranslational Protein Folding Within the Ribosome Tunnel Influences Trigger-factor Recruitment. Lin, K.F., Sun, C.S., Huang, Y.C., Chan, S.I., Koubek, J., Wu, T.H., Huang, J.J. Biophys J., 2012, 102(12), 2818-27. |
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The N-terminus of TDP-43 Promotes Its Oligomerization and Enhances DNA Binding Affinity. Chang, C.K., Wu, T.H., Wu, C.Y., Chiang, M.H., Toh, E.K., Hsu, Y.C., Lin, K.F., Liao, Y.H., Huang, T.H., Huang, J.J. Biochem Biophys Res Commun., 2012, 425(2), 219-24. |
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Efficient Isolation of Pseudomonas Aeruginosa Type III Secretion Translocators and Assembly of Heteromeric Transmembrane Pores in Model Membranes. Romano, F.B., Rossi, K.C., Savva, C.G., Holzenburg, A., Clerico, E.M., Heuck, A.P. Biochemistry., 2011, 50(33), 7117-31. |
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Production of Ribosome-released Nascent Proteins With Optimal Physical Properties. Ziehr, D.R., Ellis, J.P., Culviner, P.H., Cavagnero, S. Anal Chem., 2010, 82(11), 4637-43. |
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Excited-state Lifetime Studies of the Three Tryptophan Residues in the N-lobe of Human Serum Transferrin James, N.G., Ross, J.A., Mason, A.B., Jameson, D.M. Protein Science, 2010, 19, 99-110. |
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Confined Dynamics of a Ribosome-bound Nascent Globin: Cone Angle Analysis of Fluorescence Depolarization Decays in the Presence of Two Local Motions. Ellis, J.P., Culviner, P.H., Cavagnero, S. Protein Sci., 2009, 18(10), 2003-15. |
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Structural and Thermodynamic Characterization of T4 Lysozyme Mutants and the Contribution of Internal Cavities to Pressure Denaturation. Ando, N., Barstow, B., Baase, W.A., Fields, A., Matthews, B.W., Gruner, S.M. Biochemistry., 2008, 47(42), 11097-109. |
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Chain Dynamics of Nascent Polypeptides Emerging From the Ribosome. Ellis, J.P., Bakke, C.K., Kirchdoerfer, R.N., Jungbauer, L.M., Cavagnero, S. ACS Chem Biol., 2008, 3(9), 555-66. |
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Fructose-1,6-bisphosphate Acts Both as an Inducer and as a Structural Cofactor of the Central Glycolytic Genes Repressor (CggR). Zorrilla, S., Chaix, D., Ortega, A., Alfonso, C., Doan, T., Margeat, E., Rivas, G., Aymerich, S., Declerck, N., Royer, C.A. Biochemistry., 2007, 46(51), 14996-5008. |
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Inducer-Modulated Cooperative Binding of the Tetrameric CggR Repressor to Operator DNA Zorrilla, S., Doan, T., Alfonso, C., Margeat, E., Ortega, A., Rivas, G., Aymerich, S., Royer, C.A., Declerck, N. Biophsyical J., 2007, 92(9), 3215-3227. |
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Hydration of the Folding Transition State Ensemble of a Protein. Brun, L., Isom, D.G., Velu, P., García-Moreno, B., Royer, C.A. Biochemistry., 2006, 45(11), 3473-80. |
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Time-resolved Fluorescence Anisotropy Studies Show Domain-specific Interactions of Calmodulin With IQ Target Sequences of Myosin V. Bayley, P., Martin, S., Browne, P., Royer, C. Eur Biophys J., 2003, 32(2), 122-7. |
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Reorientational Dynamics of Enzymes Adsorbed on Quartz: A Temperature-Dependent Time-Resolved TIRF Anisotropy Study Czeslik, C., Royer, C., Hazlett, T., Mantulin, W. Biophys. J., 2003, 84, 2533-2541. |
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Equilibrium Binding of Estrogen Receptor With DNA Using Fluorescence Anisotropy. Ozers, M.S., Hill, J.J., Ervin, K., Wood, J.R., Nardulli, A.M., Royer, C.A., Gorski, J. J Biol Chem., 1997, 272(48), 30405-11. |
Environmental Studies
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Real-Time Determination of Picomolar Free Cu(II) in Seawater Using a Fluorescence-Based Fiber Optic Biosensor Zeng, H.-H., Thompson, R. B., Maliwal, B. P., Fones, G. R., Moffett, J. W., Fierke, C. A. Anal. Chem., 2003, 75(24), 6807-6812. |
Pharmaceutical Chemistry
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Characterization of Fluorinated Catansomes: A Promising Vector in Drug-delivery. Rosholm, K.R., Arouri, A., Hansen, P.L., González-Pérez, A., Mouritsen, O.G. Langmuir., 2012, 28(5), 2773-81. |
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Indocyanine Green-Loaded Biodegradable Nanoparticles: Preparation, Physicochemical Characterization and in Vitro Release Saxena, V., Sadoqi, M., Shao., J. Int. J. Pharm., 2004, 278(2), 293-301. |
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Enhanced Photo-Stability, Thermal-Stability and Aqueous-Stability of Indocyanine Green in Polymeric Nanoparticulate Systems Saxena, V., Sadoqi, M., Shao., J. J. Photochem. Photobiol., 2004, 74(1) 29-38. |
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Degradation Kinetics of Indocyanine Green in Aqueous Solution Saxena, V., Sadoqi, M., Shao., J. J. Pharm Sci.,2003, 92(10), 2090-2097. |
Physical Chemistry
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Developing Red-emissive Ruthenium(II) Complex-based Luminescent Probes for Cellular Imaging. Zhang, R., Ye, Z., Yin, Y., Wang, G., Jin, D., Yuan, J., Piper, J.A. Bioconjug Chem., 2012, 23(4), 725-33. |
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Noncovalent Assembly of a Metalloporphyrin and an Iron Hydrogenase Active-site Model: Photo-induced Electron Transfer and Hydrogen Generation. Li, X., Wang, M., Zhang, S., Pan, J., Na, Y., Liu, J., Akermark, B., Sun, L. J Phys Chem B., 2008, 112(27), 8198-202. |
Sensors
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Water Soluble Indodicarbocyanine Dyes Based on 2,3-dimethyl-3-(4-sulfobutyl)-3H-indole-5-sulfonic Acid Markova, L.I., Fedyunyayeva, I.A., Povrozin, Y.A., Semenova, O.M., Khabuseva, S.U., Terpetschnig, E.A., Patsenker, L.D. Dyes and Pigments, 2013, 96(2), 535-46. |
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Seta-633 - a NIR Fluorescence Lifetime Label For Low-Molecular-Weight Analytes Povrozin, Y.A., Kolosova, O.S., Obukhova, O.M., Tatarets, A.L., Sidorov, V.I., Terpetschnig, E.A., Patsenker, L.D. Bioconjug Chem., 2009, 20(9), 1807-12. |
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Near-Infrared, Dual-Ratiometric Fluorescent Label for Measurement of pH Povrozin, Y.A., Markova, L.I., Tatarets, A.L., Sidorov, V.I., Terpetschnig, E.A., Patsenker, L.D. Anal Biochem., 2009, 390(2), 136-40. |
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Synthesis of Water-Soluble, Ring-Substituted Squaraine Dyes and Their Evaluation as Fluorescent Probes and Labels Tatarets, A.L., Fedyunyayeva, I.A., Dyubko, T.S., Povrozin, Y.A., Doroshenko, A.O., Terpetschnig, E.A., Patsenker, L.D. Anal Chim Acta., 2006, 570(2), 214-23. |
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Fatty Acid Sensor for Low-Cost Lifetime-Assisted Ratiometric Sensing Using a Fluorescent Fatty Acid Binding Protein Bartolome, A., Bardliving, C., Rao G., Tolosa L. Analytical Biochemistry, 2005, 34(1), 133-139. |
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Dual-Labeled Glucose Binding Protein for Ratiometric Measurements of Glucose Ge, X., Tolosa, L., Rao, G. Analytical Chemistry, 2004, 76(5), 1403-10. |
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Reagentless Optical Sensing of Glutamine Using a Dual-Emitting Glutamine-Binding Protein Tolosa, L., Ge, X., Rao, G. Analytical Biochemistry, 2003, 314(2), 199-205. |
ChronosBH
Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)
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Hydroxymethylation of DNA Influences Nucleosomal Conformation and Stability in Vitro. Mendonca, A., Chang, E.H., Liu, W., Yuan, C. Biochim Biophys Acta., 2014, 1839(11), 1323-9. |
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Solution Scattering and FRET Studies on Nucleosomes Reveal DNA Unwrapping Effects of H3 and H4 Tail Removal. Andresen, K., Jimenez-Useche, I., Howell, S.C., Yuan, C., Qiu, X. PLoS One., 2013, 8(11), e78587. |
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DNA Methylation Regulated Nucleosome Dynamics. Jimenez-Useche, I., Ke, J., Tian, Y., Shim, D., Howell, S.C., Qiu, X., Yuan, C. Sci Rep., 2013, 3, 2121. |
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Clipping of Flexible Tails of Histones H3 and H4 Affects the Structure and Dynamics of the Nucleosome Nurse, N.P., Jimenez-Useche, I., Smith, I.T., Yuan, C. Biophys J., 2013, 104(5), 1081-8. |
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The Effect of DNA CpG Methylation on the Dynamic Conformation of a Nucleosome Jimenez-Useche, I., Yuan, C. Biophysical Journal, 2012, 103, 2502-2512. |
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Conformational Dynamics of Titin PEVK Explored with FRET Spectroscopy Huber, T., Grama, L., Hetényi, C., Schay, G., Fülöp, L., Penke, B., Kellermayer, M.S.Z. Biophysical Journal, 2012, 103(7), 1480-1489. |
Photosynthesis
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Lessons From Chlorophylls: Modifications of Porphyrinoids Towards Optimized Solar Energy Conversion. Karcz, D., Boron, B., Matwijczuk, A., Furso, J., Staron, J., Ratuszna, A., Fiedor, L. Molecules., 2014, 19(10), 15938-54. |
Physical Chemistry
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Photophysical Characterization of [Ir(ppy)2(dmb)][PF6] Towards Application in Light-Emitting Electrochemical Cells (LECs) Zanoni, K.P., Sanematsu, M., Murakami Iha, N.Y. Inorg Chem, 2014, 43, 162-164. |
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Solid State Molecular Device Based on a Rhenium(I) Polypyridyl Complex Immobilized on TiO2 Films Patrocinio, A.O., Frin, K.P., Murakami Iha, N.Y. Inorg. Chem., 2013, 52, 5889-5896. |
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A Pyrene Maleimide with a Flexible Linker for Sampling of Longer Inter-Thiol Distances by Excimer Formation Niwayama, S., Kassar, A.S., Zhao, T., Sutton, R.B., Altenberg, G.A. PLoS ONE, 2011, 6(10). |
Diagnostics
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A Dual-Modality Optical Biopsy Approach for In Vivo Detection of Prostate Cancer in Rat Model Sharma, V., Patel, N., Shen, J., Tang, L., Alexandrakis, G., Liu, H. Journal of Innovative Optical Health Sciences, 2011, 4(3), 269-277. |
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Auto-fluorescence Lifetime and Light Reflectance Spectroscopy for Breast Cancer Diagnosis: Potential Tools for Intra-Operative Margin Detection Sharma, V., Shivalingaiah, S., Peng., Y., Euhus, D., Gryczynski, Z., Liu, H. Biomed Opt Express, 2012, 3(8), 1825-1840. |
K2
Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)
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Sometimes It Takes Two to Tango: Contributions of Dimerization too Functions of Human α-defensin HNP1 Peptide Pazgier, M., Wei, G., Ericksen, B., Jung, G., Wu, Z., de Leeuw, E., Yuna, W., Szmacinski, H., Lu, W.-Y., Lubkowski, J., Lehrer, R.I., Lu, W. J Biol Chem, 2012, 287(12), 8944-8953. |
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Targeting TLR4 Signaling by TLR4 TIR-derived Decoy Peptides: Identification of the TLR4 TIR Dimerization Interface Toshchakov, V.Y., Szacinski, H., Couture, L.A., Lakowicz, J.R., Vogel, S.N. J Immunol, 2011, 186(8), 4819-4827. |
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A New Competitive Fluorescence Assay for the Detection of Patulin Toxin de Champdoré, M., Bazzicalupo, P., De Napoli, L., Montesarchio, D., Di Fabio, G., Cocozza, I., Parracino, A., Rossi, M., D'Auria, S. Anal. Chem., 2007, 79, 751-757. |
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Fluorescence of Amphotericin B-Deoxycholate (Fungizone) Monomers and Aggregates and the Effect of Heat-Treatment Stoodley, R., Wasan, K.M., Bizzotto, D. Langmuir, 2007, 23(17), 8718-8725. |
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Structural Dynamics of the Actin–Myosin Interface by Site-Directed Spectroscopy Korman, V.L., Anderson, S.E.B., Prochniewicz, E., Titus, M.A., Thomas, D.D. Journal of Molecular Biology, 2006, 356(5), 1107-1117. |
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Genetic and Fluorescence Studies of Affinity Maturation in Related Antibodies Pauyo, T., Hilinski, G.J., Chiu, P.T., Hansen, D.E., Choi, Y.J., Ratner, D.I., Shah-Mahoney, N., Southern, C.A., O'Hara, P.B. Molecular Immunology, 2006, 43(7), 812-821. |
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A Fluorescence Spectroscopy Study on the Interactions of the TAT-PTD Peptide with Model Lipid Membranes Tiriveedhi, V., Butko, P. Biochemistry, 2007, 46, 3888-3895. |
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IIAGlc Inhibition of Glycerol Kinase: A Communications Network Tunes Protein Motions at the Allosteric Site Yu, P., Lasagna, M., Pawlyk, A.C., Reinhart, G.D., Pettigrew, D.W. Biochemistry, 2007, Printing Pending. |
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Inhibition of Amyloid Fibril Formation and Cytotoxicity by Hydroxyindole Derivatives Cohen, T., Frydman-Marom, A., Rechter, M., Gazit, E. Biochemistry, 2006, 45, 4727-4735. |
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Phosphorylation of a Single Head of Smooth Muscle Myosin Activates the Whole Molecule Rovner, A.S., Fagnant, P.M., Trybus, K.M. Biochemistry, 2006, 45, 5280-5289. |
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Expression and Physicochemical Characterization of an Extracellular Segment of the Receptor Protein Tyrosine Phosphatase IA-2 Primo, M.E., Sica, M.P., Risso, V.A., Poskus, E., Ermácora, M.R. Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 2006, 1764(2), 174-181. |
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Structural Characterization of Novel Chitin-Binding Lectins from the GenusArtocarpus and Their Antifungal Activity Trindade, M.B., Lopes, J.L.S., Soares-Costa, A., Monteiro-Moreira, A.C., Moreira, R.A., Oliva, M.L.V., Beltramini, L.M. Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 2006, 1764(1), 146-152. |
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Direct Detection of Calmodulin Tuning By Ryanodine Receptor Channel Targets Using a Ca2+-Sensitive Acrylodan-Labeled Calmodulin Fruen, B.R., Balog, E.M., Schafer, J., Nitu, F.R., Thomas, D.D., and Corena, R.L. Biochemistry, 2005, 44, 278-284. |
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Reductive and Oxidative DNA Damage by Photoactive Platinum(II) Intercalators Lu, W., Vicic, D.A., Barton, J.K. Inorg. Chem., 2005, 44(22), 7970-7980. |
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Improved "Optical Highlighter" Probes Derived from Discosoma Red Fluorescent Protein Robinson, L.C. Biophys. J., 2005, 88, 1444-1457. |
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Essential Role for Pro21 in Phospholamban for Optimal Inhibition of the Ca-ATPase Li, J., Boschek, C.B., Xiong, Y., Sacksteder, C.A., Squier, T.C., Bigelow, D.J. Biochemistry, 2005, 44(49), 16181-16191. |
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Sequence-Specific Fluorescence Detection of DNA by Polyamide-Thiazole Orange Conjugates Fechter, E.J., Olenyuk, B., Dervan, P.B. J. Am. Chem. Soc., 2005, 127(47), 16685-16691. |
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Ethanol-Perturbed Amyloidogenic Self-Assembly of Insulin: Looking for Origins of Amyloid Strains Dzwolak, W., Grudzielanek, S., Smirnovas, V., Ravindra, R., Nicolini, C., Jansen, R., Loksztejn, A., Porowski, S., Winter, R. Biochemistry, 2005, 44(25), 8948-8958. |
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Probing the Interior of Peptide Amphiphile Supramolecular Aggregates Tovar, J.D., Claussen, R.C., Stupp, S.I. J. Am. Chem. Soc., 2005, 127(20), 7337-7345. |
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Reductive and Oxidative DNA Damage by Photoactive Platinum(II) Intercalators Lu, W., Vicic, D.A., Barton, J.K. Inorg. Chem., 2005, 44(22), 7970-7980. |
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Structural Uncoupling between Opposing Domains of Oxidized Calmodulin Underlies the Enhanced Binding Affinity and Inhibition of the Plasma Membrane Ca-ATPase Chen, B., Mayer, M.U., Squier, T.C. Biochemistry, 2005, 44(12), 4737-4747. |
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Trans Fatty Acid Derived Phospholipids Show Increased Membrane Cholesterol and Reduced Receptor Activation as Compared To Their Cis Analogs Niu, S.-L., Mitchell, D.C., Litman, B.J. Biochemistry, 2005, 44(11), 4458-4465. |
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Phospholamban Pentamer Quaternary Conformation Determined by In-Gel Fluorescence Anisotropy Robia, S.L., Flohr, N.C., Thomas, D.D. Biochemistry, 2005, 44(11), 4302-4311. |
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Oligomeric State and Mode of Self-Association ofThermotoga maritima Ribosomal Stalk Protein L12 in Solution Moens, P.D.J., Wahl, M.C., Jameson, D.M. Biochemistry, 2005, 44(9), 3298-3305. |
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Dynamic Motion of Helix A in the Amino-Terminal Domain of Calmodulin Is Stabilized upon Calcium Activation Chen, B., Mayer, M.U., Markillie, L.M., Stenoien, D.L., Squier, T.C. Biochemistry, 2005, 44(3), 905-914. |
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Interaction of the 20 kDa and 63 kDa Fragments of Anthrax Protective Antigen: Kinetics and Thermodynamics Christensen, K.A., Krantz, B.A., Melnyk, R.A., Collier, R.J. Biochemistry, 2005, 44(3), 1047-1053. |
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A Detergent-like Mechanism of Action of the Cytolytic Toxin Cyt1A fromBacillus thuringiensis var.israelensis Manceva, S.D., Pusztai-Carey, M., Russo, P.S., Butko, P. Biochemistry, 2005, 44(2), 589-597. |
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Structural Uncoupling between Opposing Domains of Oxidized Calmodulin Underlies the Enhanced Binding Affinity and Inhibition of the Plasma Membrane Ca-ATPase Chen, B., Mayer, M.U., Squier, T.C. Biochemistry, 2005, 44(12), 4737-4747. |
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Reductive and Oxidative DNA Damage by Photoactive Platinum(II) Intercalators Lu, W., Vicic, D.A., Barton, J.K. Inorg. Chem., 2005, 44(22), 7970-7980. |
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Probing the Interior of Peptide Amphiphile Supramolecular Aggregates Tovar, J.D., Claussen, R.C., Stupp, S.I. J. Am. Chem. Soc., 2005, 127(20), 7337-7345. |
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Complex Formation Between Plasmid DNA and Self-Aggregates of Deoxycholic Acid-Modified Chitosan Lee, K.Y., Kwon, I.C., Jo, W.H., Jeong, S.Y. Polymer, 2005, 46(19), 8107-8112. |
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Heterologous Expression, Characterization and Structural Studies of a Hydrophobic Peptide from the HIV-1 p24 Protein Castilho, P.V., Campana, P.T., Garcia, A.F., Beltramini, L.M., Araújo, A.P.U. Peptides, 2005, 26(2), 243-249. |
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Conformation of a Synthetic Antigenic Peptide from HIV-1 p24 Protein Induced by Ionic Micelles Campana, P.T., Beltramini, L.M., Costa-Filho, A.J., Tonarelli, G., Lottersberger, J., Bianconi, M.L. Biophysical Chemistry, 2005, 113(2), 175-182. |
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A Nature of Conformational Changes of Yeast tRNAPhe: High Hydrostatic Pressure Effects Giel-Pietraszuk, M., Barciszewski, J. International Journal of Biological Macromolecules, 2005, 37(3), 109-114. |
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Calcium Activation of the Ca-ATPase Enhances Conformational Heterogeneity between Nucleotide Binding and Phosphorylation Domains Chen, B., Squier, T. C., Bigelow, D. J. Biochemistry, 2004, 43(14), 4366-4374. |
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Conformational Changes within the Cytosolic Portion of Phospholamban upon Release of Ca-ATPase Inhibition Li, J., Bigelow, D. J., Squier, T. C. Biochemistry, 2004, 43(13), 3870-3879. |
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Correlation between Mechanical and Enzymatic Events in Contracting Skeletal Muscle Fiber Shepard, A., Borejdo, J. Biochemistry, 2004, 43(10), 2804-2811. |
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Cholesterol Superlattice Modulates the Activity of Cholesterol Oxidase in Lipid Membranes Wang, M. M., Olsher, M., Sugar, I. P., Chong, P. L.-G. Biochemistry, 2004, 43(8), 2159-2166. |
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Phospholamban Binds in a Compact and Ordered Conformation to the Ca-ATPase Li, J., Xiong, Y., Bigelow, D. J., Squier, T. C. Biochemistry, 2004, 43(2), 455-463. |
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Partitioning of Dual-Lipidated Peptides into Membrane Microdomains: Lipid Sorting vs Peptide Aggregation Janosch, S., Nicolini, C., Ludolph, B., Peters, C., Volkert, M., Hazlet, T. L., Gratton, E., Waldmann, H., Winter, R. J. Am. Chem. Soc., 2004, 126(24), 7496-7503. |
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Direct Detection of Phospholamban and Sarcoplasmic Reticulum Ca-ATPase Interaction in Membranes Using Fluorescence Resonance Energy Transfer Mueller, B., Karim, C. B., Negrashov, I. V., Kutchai, H., Thomas, D. D. Biochemistry, 2004, 43(27), 8754-8765. |
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DNA Charge Transport: Conformationally Gated Hopping through Stacked Domains O'Neill, M. A., Barton, J. K. J. Am. Chem. Soc., 2004, 126(37), 11471-11483. |
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Short-Lived Fluorescence Component of DPH Reports on Lipid-water Interface of Biological Membranes Konopásek, I., Vecer, J., Strzalka, K., Amler, E. Chemistry and Physics of Lipids, 2004, 130, 135-144. |
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A Recombinant Glutamine-Binding Protein fromEscherichia coli: Effect of Ligand-Binding on Protein Conformational Dynamics Herman, P., Vecer, J., Scognamiglio, V., Staiano, M., Rossi, M., D'Auria, S. Biotechnol. Prog., 2004, 20(6), 1847-1854. |
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High Hydrostatic Pressure Perturbs the Interactions between CF0F1 Subunits and Induces a Dual Effect on Activity Souza, M.O., Creczynski-Pasa, T.B., Scofano, H.M., Gräber, P., Mignaco, J.A. The International Journal of Biochemistry & Cell Biology, 2004, 36(5), 920-930. |
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Conformational and Enzymatic Changes of 20S Proteasome of Rat Natural Killer Cells Induced by Mono- and Divalent Cations Reshetnyak, Y.K., Kitson, R.P., Lu, M., Goldfarb, R.H. Journal of Structural Biology, 2004, 145(3), 263-271. |
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Effects of Ethanol on Lipid Bilayers with and without Cholesterol: The Distearoylphosphatidylcholine System Tran, R., Ho, S., Dea, P. Biophysical Chemistry, 2004, 110(1-2), 39-47. |
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Cloning and Characterization of the cDNA for the Brazilian Cratomorphus distinctus Larval Firefly Luciferase: Similarities with European Lampyris noctiluca and Asiatic Pyrocoelia luciferases Viviani, V.R., Arnoldi, F.G.C., Brochetto-Braga, M., Ohmiya, Y. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 2004, 139(2), 151-156. |
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Characterization of Lecithin: Cholesterol Acyltransferase Expressed in a Human Lung Cell Line Lane, S.B., Tchedre, K.T., Nair, M.P., Thigpen, A.E., Lacko, A.G. Protein Expression and Purification, 2004, 36(2), 157-164. |
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Sequence Specific Fluorescence Detection of Double Strand DNA Rucker, V.C., Foister, S., Melander, C., Dervan, P.B. J. Am. Chem. Soc., 2003, 125(5), 1195-1202. |
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Surface Changes and Role of Buried Water Molecules during the Sulfane Sulfur Transfer in Rhodanese and Azotobacter vinelandii: A Fluorescence Quenching and Nuclear Magnetic Relaxation Dispersion Spectroscopic Study Fasano, M., Orsale, M., Melino, S., Nicolai, E., Forlani, F., Rosato, N., Cicero, D., Pagani, S., Paci, M. Biochemistry, 2003, 42, 8550-8557. |
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Phosphorylation by cAMP-Dependent Protein Kinase Modulates the Structural Coupling between the Transmembrane and Cytosolic Domains of Phospholamban Li, J., Bigelow, D. J., Squier, T. C. Biochemistry, 2003, 42(36), 10674-10682. |
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Evidence for Tryptophan Residues in the Cation Transport Path of the Na+,K+-ATPase Yudowski, G. A., Bar Shimon, M., Tal, D. M., Gonzalez-Lebrero, R. M., Rossi, R. C., Garrahan, P. J., Beauge, L. A., Karlish, S. J. D. Biochemistry, 2003, 42(34), 10212-10222. |
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Quantification of Allosteric Influence of Escherichia coli Phosphofructokinase by Frequency Domain Fluorescence Pham, A.S., Reinharty, G.D. Biophys. J., 2003, 85, 656-666. |
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Fluorescence Resonance Energy Transfer Studies on Anthrax Lethal Toxin Croney, J.C., Cunningham, K.M., Collier, R.J., Jameson, D.M. FEBS Letters, 2003, 550, 175-178. |
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DNA Cross-Linking with Metallointercalator-Peptide Conjugates Copeland, K.D., Lueras, A.M.K., Stemp, E.D.A., Barton, J.K. Biochemistry, 2002, 41, 12785-12797. |
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Structural and Biochemical Characterization of a Fluorogenic Rhodamine-Labeled Malarial Protease Substrate Blackman, M.J., Corrie, J.E., Croney, J.C., Kelly, G., Eccleston, J.F., Jameson, D.M. Biochemistry, 2002, 41, 12244-12252. |
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Lateral Diffusion Coefficients in Membranes Measured by Resonance Energy Transfer and a New Algorithm for Diffusion in Two Dimensions Kuśba, J., Li, L., Gryczynski, I., Piszczek, G., Johnson, M., Lakowicz, J.R. Biophys. J., 2002, 82, 1358-1372. |
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Time-Resolved Polarization Imaging By Pump-Probe (Stimulated Emission) Fluorescence Microscopy Buehler, C., Dong, C.Y., So, P.T.C., French, T., Gratton, E. Biophys. J., 2000, 79, 536-549. |
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Low Temperature and Pressure Stability of Picornaviruses: Implications for Virus Uncoating Oliveira, A.C., Ishimaru, D., Gonçalves, R.B., Smith, T.J., Mason, P., Sá-Carvalho, D., Silva, J.L. Biophys. J., 1999, 76, 1270-1279. |
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Water Dynamics in Glycosphingolipid Aggregates Studied by LAURDAN Fluorescence Bagatolli, L.A., Gratton, E., Fidelio, G.D. Biophys. J., 1998, 75, 331-341. |
Environmental Studies
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Hg2+ Reacts with Different Components of the NADPH: Protochlorophyllide Oxidoreductase Macrodomains Solymosi, K., Lenti, K., Myśliwa-Kurdziel, B., Fidy, J., Strzalka, K., Böddi, B. Plant Biology, 2004, 6, 358-367. |
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Real-Time Determination of Picomolar Free Cu(II) in Seawater Using a Fluorescence-Based Fiber Optic Biosensor Zeng, H.-H., Thompson, R.B., Maliwal, B.P., Fones, G. R., Moffett, J.W., Fierke, C.A. Anal. Chem., 2003, 75(24), 6807-6812. |
Nanomaterials & Nanotechnology
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Fabrication and Characterization of Planar Plasmonic Substrates with High Fluorescence Enhancement Szmacinski, H., Bedugu, R., Lakowicz, J.R.. J. Phys. Chem., 2010, 114(49), 21142-21149. |
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Coordinatively Induced Length Control and Photoluminescence of W18O49 Nanorods Woo, K., Hong, J., Ahn, J.-P., Park, J.-K., Kim, K.J. Inorg. Chem., 2005, 44(20), 7171-7174. |
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Physicochemical Characterizations of Self-Assembled Nanoparticles of Glycol Chitosan-Deoxycholic Acid Conjugates Kim, K., Kwon, S., Park, J.H., Chung, H., Jeong, S.Y., Kwon, I.C., Kim, I.-S. Biomacromolecules, 2005, 6(2), 1154-1158. |
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Preparation and Characterization of Self-Assembled Nanoparticles of Heparin-Deoxycholic Acid Conjugates Park, K., Kim, K., Kwon, I.C., Kim, S.K., Lee, S., Lee, D.Y., Byun, Y. Langmuir, 2004, 20(26), 11726-11731. |
Pharmaceutical Chemistry
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Thermosensitive Poly(organophosphazene) Hydrogels for a Controlled Drug Delivery Kang, G.D., Cheon, S.H., Khang, G., Song, S.-C. European Journal of Pharmaceutics and Biopharmaceutics, in press, Available online 9 March 2006. |
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Polycations Enhance Emulsion-Mediated in Vitro and in Vivo Transfection Kim, T.W., Chung, H., Kwon, I.C., Sung, H.C., Shin, B.C., Jeon, S.Y. International Journal of Pharmaceutics, 2005, 295(1-2), 35-45. |
Photochemistry & Photobiology
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Fluorescence Lifetimes and Spectral Properties of Protochlorophyllide in Organic Solvents in Relation to the Respective Parameters in Vivo Mysliwa-Kurdziel, B., Kruk, J., Strzalka, K. Photochemistry and Photobiology, 2004, 79(1), 62-67. |
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Nanosecond Photoreduction of Cytochrome P450cam by Channel-Specific Ru-diimine Electron Tunneling Wires Dunn, A.R., Dmochowski, I. J., Winkler, J. R., Gray, H.B. J. Am. Chem. Soc., 2003, 125(41), 12450-12456. |
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PsbS-Dependent Enhancement of Feedback De-Excitation Protects Photosystem II from Photoinhibition Li, X., Muller-Moule, P., Gilmore, A.M., Niyogi, K. PNAS, 2002, 99, 15222-15227. |
Physical Chemistry
Sensors
PC1
Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)
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Family of pH (Low) Insertion Peptides for Tumor Targeting. Weerakkody, D., Moshnikova, A., Thakur, M.S., Moshnikova, V., Daniels, J., Engelman, D.M., Andreev, O.A., Reshetnyak, Y.K. Proc Natl Acad Sci U S A., 2013, 110(15), 5834-9. |
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Modulation of the pHLIP Transmembrane Helix Insertion Pathway. Karabadzhak, A.G., Weerakkody, D., Wijesinghe, D., Thakur, M.S., Engelman, D.M., Andreev, O.A., Markin, V.S., Reshetnyak, Y.K. Biophys J., 2012, 102(8), 1846-55. |
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From the Cover: Side-chain Hydrophobicity Scale Derived From Transmembrane Protein Folding Into Lipid Bilayers Moon, C.P., Fleming, K.G. Proc. Natl. Acad. Sci. U.S.A., 2011, 108(25), 10174-7. |
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Specificity in DNA Recognition by a Peptide from Papillomavirus E2 Protein Faber-Barata, J., Mohana-Borges, R., Lima, L.M. T.R. FEBS Letters, 2006, 580(8), 1919-1924. |
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The Asymmetry in the Mature Amino-Terminus of ClpP Facilitates a Local Symmetry Match in ClpAP and ClpXP Complexes Bewley, M.C., Graziano, V., Griffin, K., Flanagan, J.M. Journal of Structural Biology, 2006, 153(2), 113-128 |
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Methane Monooxygenase Hydroxylase and B Component Interactions Zhang, J., Wallar, B.J., Popescu, C.V., Renner, D.B., Thomas, D.D., Lipscomb, J.D. Biochemistry, 2006, 45(9), 2913-2926. |
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The SRC-3/AIB1 Coactivator Is Degraded in a Ubiquitin- and ATP-Independent Manner by the REGγ Proteasome Li, X., Lonard, D.M., Jung, S.Y., Malovannaya, A., Feng, Q., Qin, J., Tsai, S.Y., Tsai, M.-J., O'Malley, B.W. Cell, 2006, 124(2), 381-392. |
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Target Structure-Based Discovery of Small Molecules that Block Human p53 and CREB Binding Protein Association Sachchidanand, Resnick-Silverman, L., Yan, S., Mutjaba, S., Liu, W.-J., Zeng, L., Manfredi J.J., Zhou, M.M. Chemistry & Biology, 2006, 13(1), 81-90. |
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Supramolecular Fluorophores for Biological Studies: Phenylene Vinylene-Amino Acid Amphiphiles Harrington, D.A., Behanna, H.A., Tew, G.N., Claussen, R.C., Stupp, S.I. Chemistry & Biology, 2005, 12(10), 1085-1091. |
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Förster Resonance Energy Transfer Measurements Are Consistent with a Helical Bundle Model for Lipid-Free Apolipoprotein Brouillette, C.G., Dong, W.-J., Yang, Z.W., Ray, M.J., Protasevich, I.I., Cheung, H.C., Engler, J.A. Biochemistry, 2005, 44(50), 16413-16425. |
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Probing the Interior of Peptide Amphiphile Supramolecular Aggregates Tovar, J.D., Claussen, R.C., Stupp, S.I. J. Am. Chem. Soc., 2005, 127(20), 7337-7345. |
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Measurements of Internal Distance Changes of the 30 S Ribosome Using FRET with Multiple Donor-Acceptor Pairs: Quantitative Spectroscopic Methods Majumdar, Z.K., Hickerson, R., Noller, H.F., Clegg, R.M. Journal of Molecular Biology, 2005, 351(5), 1123-1145. |
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Acid- and Pressure-Induced (Un)folding of Yeast Glutathione reductase: Competition Between Protein Oligomerization and Aggregation Morais, A.C.S., Chapeaurouge, A., Ferreira, S.T. The International Journal of Biochemistry & Cell Biology, 2005, 37(9), 1890-1899. |
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A Bioactive Titanium Foam Scaffold for Bone Repair Spoerke, E.D., Murray, N.G., Li, H., Brinson, L.C., Dunand, D.C., Stupp S.I. Acta Biomaterialia, 2005, 1(5), 523-53. |
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Effect of Modification of the Length and Flexibility of the Acyl Carrier Protein-Thioesterase Interdomain Linker on Functionality of the Animal Fatty Acid Synthase Joshi, A.K., Witkowski, A., Berman, H.A., Zhang, L., Smith, S. Biochemistry, 2005, 44(10), 4100-4107. |
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Site-Directed Fluorescence Labeling Reveals Differences on the R-Conformer of Glucosamine 6-Phosphate Deaminase of Escherichia coli Induced by Active or Allosteric Site Ligands at Steady State Sosa-Peinado, A., Gonzalez-Andrade, M. Biochemistry, 2005, 44(46), 15083-15092. |
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Separating the Contribution of Translational and Rotational Diffusion to Protein Association Kuttner, Y.Y., Kozer, N., Segal, E., Schreiber, G., Haran, G. J. Am. Chem. Soc., 2005, 127(43), 15138-15144. |
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Reversible Equilibrium Unfolding of Triosephosphate Isomerase from Trypanosoma cruzi in Guanidinium Hydrochloride Involves Stable Dimeric and Monomeric Intermediates Chanez-Cardenas, M.E., Perez-Hernandez, G., Sanchez-Rebollar, B.G., Costas, M., Vazquez-Contreras, E. Biochemistry, 2005, 44(32), 10883-10892. |
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Acyl-Coenzyme A Binding Protein Expression Alters Liver Fatty Acyl-Coenzyme A Metabolism Huang, H., Atshaves, B.P., Frolov, A., Kier, A.B., Schroeder, F. Biochemistry, 2005, 44(30), 10282-10297. |
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Structural and Functional Characterization of Mycobacterium tuberculosis CmtR, a PbII/CdII-Sensing SmtB/ArsR Metalloregulatory Repressor Wang, Y., Hemmingsen, L., Giedroc, D.P. Biochemistry, 2005, 44(25), 8976-8988. |
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Oligomeric State and Mode of Self-Association of Thermotoga maritima Ribosomal Stalk Protein L12 in Solution Moens, P.D.J., Wahl, M.C., Jameson, D.M. Biochemistry, 2005, 44(9), 3298-3305. |
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A Detergent-like Mechanism of Action of the Cytolytic Toxin Cyt1A from Bacillus thuringiensis var. israelensis Manceva, S.D., Pusztai-Carey, M., Russo, P.S., Butko, P. Biochemistry, 2005, 44(2), 589-597. |
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Domain Study of Bacteriophage P22 Coat Protein and Characterization of the Capsid Lattice Transformation by Hydrogen/Deuterium Exchange Kang, S., Prevelige, Jr., P.E. Journal of Molecular Biology, 2005, 347(5), 935-948. |
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Entamoeba histolytica: Inhibition of Cellular Functions by Overexpression of EhGEF1, a Novel Rho/Rac Guanine Nucleotide Exchange Factor Aguilar-Rojas, A., Almaraz-Barrera, Mde J., Krzeminski, M., Robles-Flores, M., Hernández-Rivas, R., Guillén, N., Maroun, R.C., Vargas, M. Experimental Parasitology, 2005, 109(3), 150-162. |
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Effect of pH and Ionic Strength on the Cytolytic Toxin Cyt1A: a Fluorescence Spectroscopy Study Manceva, S.D., Pusztai-Carey, M., Butko, P. Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 2004, 1699(1-2), 123-130. |
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Inhibition of Yeast Glutathione Reductase by Trehalose: Possible Implications in Yeast Survival and Recovery from Stress Sebollela, A., Louzada, P.R., Sola-Penna, M., Sarone-Williams, V., Coelho-Sampaio, T., Ferreira, S.T. The International Journal of Biochemistry & Cell Biology, 2004, 36(5), 900-908. |
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Effects of Protein Kinase C Dependent Phosphorylation and a Familial Hypertrophic Cardiomyopathy-Related Mutation of Cardiac Troponin I on Structural Transition of Troponin C and Myofilament Activation Kobayashi, T., Dong, W.-J., Burkart, E.M., Cheung, H.C., Solaro, R.J. Biochemistry, 2004, 43(20), 5996-6004. |
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Conserved Cysteine 126 in Triosephosphate Isomerase Is Required Not for Enzymatic Activity but for Proper Folding and Stability Gonzalez-Mondragon, E., Zubillaga, R.A., Saavedra, E., Chanez-Cardenas, M.E., Perez-Montfort, R., Hernandez-Arana, A. Biochemistry, 2004, 43(11), 3255-3263. |
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Liver Fatty Acid-Binding Protein Colocalizes with Peroxisome Proliferator Activated Receptor and Enhances Ligand Distribution to Nuclei of Living Cells Huang, H., Starodub, O., McIntosh, A., Atshaves, B.P., Woldegiorgis, G., Kier, A.B., Schroeder, F. Biochemistry, 2004, 43(9), 2484-2500. |
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The Biotin Repressor: Modulation of Allostery by Corepressor Analogs Brown, P.H., Cronan, J.E., Grøtli, M., Beckett, D. Journal of Molecular Biology, 2004, 337(4), 857-869. |
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Detection of Tryptophan to Tryptophan Energy Transfer in Proteins Moens, P.D.J., Helms, M.K., Jameson, D.M. The Protein Journal, 2004, 23(1), 79-83. |
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Cdc42 Regulates the Par-6 PDZ Domain through an Allosteric CRIB-PDZ Transition Peterson, F.C., Penkert, R.R., Volkman, B.F., Prehoda, K.E. Molecular Cell, 2004, 13(5), 665-676. |
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Time-resolved Fluorescence Anisotropy Studies Show Domain-specific Interactions of Calmodulin with IQ Target Sequences of Myosin V Bayley P., Martin S., Browne P., Royer C. Eur Biophys J., 2003, 32(2), 122-7. |
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The 2'-O- and 3'-O-Cy3-EDA-ATP(ADP) Complexes with Myosin Subfragment-1 are Spectroscopically Distinct Oiwa, K., Jameson, D.M., Croney, J.C., Davis, C.T., Eccleston, J.F., Ansonz, M. Biophys. J., 2003, 84, 634-642. |
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Persistent Conformational Heterogeneity of Triosephosphate Isomerase: Separation and Characterization of Conformational Isomers in Solution Moreau, V.H., Rietveld, A.W. M., Ferreira, S.T. Biochemistry, 2003, 42(50), 14831-14837. |
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Sterol Carrier Protein-2 Selectively Alters Lipid Composition and Cholesterol Dynamics of Caveolae/Lipid Raft vs Nonraft Domains in L-Cell Fibroblast Plasma Membranes Atshaves, B.P., Gallegos, A.M., McIntosh, A.L., Kier, A.B., Schroeder, F. Biochemistry, 2003, 42(49), 14583-14598. |
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Ablation of the Liver Fatty Acid Binding Protein Gene Decreases Fatty Acyl CoA Binding Capacity and Alters Fatty Acyl CoA Pool Distribution in Mouse Liver Martin, G.G., Huang, H., Atshaves, B.P., Binas, B., Schroeder, F. Biochemistry, 2003, 42(39), 11520-11532. |
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The Mechanism of Ras GTPase Activation by Neurofibromin Phillips, R.A., Hunter, J.L., Eccleston, J.F., Webb, M.R. Biochemistry, 2003, 42(13), 3956-3965. |
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Structural and Biochemical Characterization of a Fluorogenic Rhodamine-Labeled Malarial Protease Substrate Blackman, M.J., Corrie, J.E., Croney, J.C., Kelly, G., Eccleston, J.F., Jameson, D.M. Biochemistry, 2002, 41, 12244-12252. |
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Modulation of Pig Kidney Na+/K+-ATPase Activity by Cholesterol: Role of Hydration Sotomayor, C.P., Aguilar, L.F., Cuevas, F.J., Helms, M.K., Jameson, D.M. Biochemistry, 2000, 39, 10928-10935. |
High Pressure Cell Measurements
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Determination of the Activation Volume of PLCβ by Gβγ-Subunits through the Use of High Hydrostatic Pressure Scarlata, S. Biophys. J., 2005, 88, 2867-2874. |
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Determination of the Volume Changes for Pressure-Induced Transitions of Apomyoglobin between the Native, Molten Globule, and Unfolded States Vidugiris, G.J.A., Royer, C.A. Biophys. J., 1998, 75, 463-470. |
Nanomaterials & Nanotechnology
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Size Controlled Nano Meter Phase Structure in Thin Films of Blend Polythiophene Derivatives Cui, H.-N., Teixeira, V., Zhang, J., Lee, H. Thin Solid Films, 2006, 515(1), 301-306. |
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Polymer/Gold Nanoparticle Nanocomposite Light-Emitting Diodes: Enhancement of Electroluminescence Stability and Quantum Efficiency of Blue-Light-Emitting Polymers Park, J.H., Lim, Y.T., Park, O.O., Kim, J.K., Yu, J.-W., Kim, Y.C. Chem. Mater., 2004, 16(4), 688-692. |
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Probing Single-Stranded DNA Conformational Flexibility Using Fluorescence Spectroscopy Murphy, M.C., Rasnik, I., Cheng, W., Lohman, T.M., Ha, T. Biophys. J., 2004, 86, 2530-2537. |
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Effects of Surface Passivation on Silicon Nanoparticle Photoluminescence Harwell, D.E., Croney, J.C., Qin, W., Thornton, J.T., Day, J.H., Hajime, E.K., Jameson, D.M. Chemistry Letters, 2003, 32(12), 1194-1195. |
Pharmaceutical Chemistry
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A High-Throughput Resonance Energy Transfer Assay for Staphylococcus aureus DNA Ligase Benson, E.L., Tomich, P.K., Wolfe, M.L., Choi, G.H., Hagadorn, J.C., Mutchler, V.T., Garlick, R.L. Analytical Biochemistry, 2004, 324(2), 298-300. |
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Kinase Inhibitors: Not Just for Kinases Anymore McGovern, S.L., Shoichet, B.K. J. Med. Chem., 2003, 46(8), 1478-1483. |
Physical Chemistry
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Photophysical and Electrochemical Characterization of BODIPY-Containing Dyads Comparing the Influence of an A-D-A versus D-A Motif on Excited-State Photophysics Hendel, S.J., Poe, A.M., Khomein, P., Bae, Y., Thayumanavan, S., Young, E.R. J. Phys. Chem. A, 2016, 120 (44), pp 8794-8803 |
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Blue-green Iridium(III) Emitter and Comprehensive Photophysical Elucidation of Heteroleptic Cyclometalated Iridium(III) Complexes. Zanoni, K.P., Kariyazaki, B.K., Ito, A., Brennaman, M.K., Meyer, T.J., Murakami Iha, N.Y. Inorg Chem., 2014, 53(8), 4089-99. |
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Photophysical Characterization of [Ir(ppy)2(dmb)][PF6] Towards Application in Light-Emitting Electrochemical Cells (LECs) Zanoni, K.P., Sanematsu, M., Murakami Iha, N.Y. Inorg Chem, 2014, 43, 162-164. |
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On the Use of Theoretical Tools in the Study of Photophysical Properties of the New Eu(fod)3 Complex with Diphenbipy Dos Santos, E.R., dos Santos, M.A., Freire, R.O., Júnior, S.A., Barreto, L.S., de Mesquita, M.E. Chemical Physics Letters, 2006, 418(4-6), 337-341. |
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Spectroscopic Properties of the Eu(fod)3Phen–NO Incorporated Carboxylate Glass Beltrão, M.A., Santos, M.L., Mesquita, M.E., Barreto, L.S., da Costa, Jr., N.B., Freire, R.O., dos Santos, M.A.C. Journal of Luminescence, 2006, 116(1-2), 132-138. |
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White Light Emission From a Polymer Bilayer by Incomplete Cascade Energy Transfer Park, J.H., Park, O.O., Kim, J.K., Yu, J.-W., Kim, Y.C. Current Applied Physics, 2006, 6(4), 640-643. |
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White Polymer Light-Emitting Devices From Ternary-Polymer Blend with Concentration Gradient Park, J.H., Lee, T.-W., Kim, Y.C., Park, O.O., Kim, J.K. Chemical Physics Letters, 2005, 403(4-6), 293-297. |
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α-Crystallin Binding in Vitro to Lipids from Clear Human Lenses Grami, V., Marrero, Y., Huang, L., Tang, D., Yappert, M.C., Borchman, D. Experimental Eye Research, 2005, 81(2), 138-146. |
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Remote and Adjacent Excited-State Electron Transfer At TiO2 Interfaces Sensitized to Visible Light with Ru(II) Compounds Liu, F., Meyer, G. J. Inorg. Chem., 2005, 44(25), 9305-93. |
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Spectroscopic Studies of the Intermolecular Interactions of Congo Red and Tinopal CBS with Modified Cellulose Fibers Yamaki, S.B., Barros, D.S., Garcia, C.M., Socoloski, P., Oliveira, Jr., O.N., Atvars, Langmuir, T.D.Z. 2005, 21(12), 5414-5420. |
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Diffusion of a Single Component in a Binary Polymer Blend Upon Annealing Monitored by Fluorescence Microspectroscopy De Andrade, M.L., Atvars, T.D.Z. Macromolecules, 2004, 37(25), 9626-9630. |
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Photophysical Study in Blends of Poly(alkyl methacrylate-Co-styrene)/Polystyrene De Andrade, M.L., Atvars, T.D.Z. Macromolecules, 2004, 37(24), 9096-9108. |
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Optoelectronic and Photophysical Properties of Polyfluorene Blends as Side-Chain Length and Shape Byun, H. Y., Chung, I. J., Shim, H.-K., Kim, C. Y. Macromolecules, 2004, 37(18), 6945-6953. |
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Hole-Transporting Property of a Chemically Hybridized Poly(vinylcarbazole)-Fullerene Park, J.H., Park, O.O., Kim, J., Yu, J.-W., Kim, J.K., Kim, Y.C. Current Applied Physics, 2004, 4(6), 659-662. |
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Surface Treatment to Enhance the Quantum Efficiency of Semiconductor Nanocrystals Jang, E., Jun, S., Chung, Y., Pu, L. J. Phys. Chem. B., 2004, 108(15), 4597-4600. |
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Dynamic and Static Fluorescence Spectroscopy Applied to Miscibility of Poly(n-butyl methacrylate-co-styrene) with Polystyrene and Morphological Analysis by Epifluorescence Microscopy De Andrade, M.L., Atvars, T.D.Z. J. Phys. Chem. B., 2004, 108(13), 3975-3984. |
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Photo and Electroluminescence Studies of Poly(methyl methacrylate-co-9-anthryl methyl methacrylate) De Deus, J.F., Andrade, M.L., Atvars, T.D.Z., Akcelrud, L. Chemical Physics, 2004, 297(1-3), 177-186. |
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The Effects of Alkyl Side-Chain Length and Shape of Polyfluorenes on the Photoluminescence Spectra and the Fluorescence Lifetimes of Polyfluorene Blends with Poly(n-vinylcarbazole) Byun, H.Y., Chung, I.J., Shim, H.-K., Kim, C.Y. Chemical Physics Letters, 2004, 393(1-3), 197-203. |
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Photophysical Study of a Conjugated-non-Conjugated PPV-Type Electroluminescent Copolymer Machado, A.M., Da Motta Neto, J.D., Cossiello, R.F., Atvars, T.D.Z., Ding, L., Karasz, F.E., Akcelrud, L. Polymer, 2005, 46(8), 2452-2460. |
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Enhanced Light Output in Bilayer Light-Emitting Diodes with Film Thickness Variations Park, J.H., Lee, K.-J., Park, O.O., Yu, J.-W., Kim, Y.C., Kim, J.K. Chemical Physics Letters, 2004, 386 (1-3),101-104. |
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Orbital Control of the Color and Excited State Properties of Formylated and Fluorinated Derivatives of Azulene Shevyakov, S.V., Li, H., Muthyala, R., Asato, A.E., Croney, J.C., Jameson, D.M., Liu, R.S.H. J. Phys. Chem. A., 2003, 107(18), 3295-3299. |
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Immobilized Particle Arrays: Coalescence of Planar- and Suspension-Array Technologies Stevens, P.W., Wang, C. H. J., Kelso, D.M. Anal. Chem., 2003, 75(5), 1141-1146. |
Sensors
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Individual Metal Ligands Play Distinct Functional Roles in the Zinc Sensor Staphylococcus aureus CzrA Pennella, M.A., Arunkumar, A.I., Giedroc, D.P. Journal of Molecular Biology, 2006, 356(5), 1124-1136. |
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Structural Insights into Homo- and Heterotropic Allosteric Coupling in the Zinc Sensor S. aureus CzrA from Covalently Fused Dimers Lee, S., Arunkumar, A.I., Chen, X., Giedroc, D.P. J. Am. Chem. Soc., 2006, 128(6), 1937-1947. |
Alba
Biochemistry
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The N-Terminal Domain of ALS-Linked TDP-43 Assembles without Misfolding. Tsoi, P.S., Choi, K.J., Leonard, P.G., Sizovs, A., Moosa, M.M., MacKenzie, K.R., Ferreon, J.C., Ferreon, A.C.M. Angew Chem Int Ed Engl. 2017 Oct 2;56(41):12590-12593. doi: 10.1002/anie.201706769. Epub 2017 Sep 5. |
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The Use of FLIM-FRET for the Detection of Mitochondria-associated Protein Interactions. Osterlund, E.J., Liu, Q., Andrews, D.W. Methods Mol Biol., 2015, 1264, 395-419. |
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Measuring Förster Resonance Energy Transfer Using Fluorescence Lifetime Imaging Microscopy Day, R. Microscopy Today, 2015, 23(3), 44-51. |
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Cis and Trans Internucleosomal Interactions of H3 and H4 Tails in Tetranucleosomes Nurse, N.P., Yuan, C. Biopolymers., 2015, 103(1), 33-40. |
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A Decoy Peptide That Disrupts TIRAP Recruitment to TLRs Is Protective in a Murine Model of Influenza. Piao, W., Shirey, K.A., Ru, L.W., Lai, W., Szmacinski, H., Snyder, G.A., Sundberg, E.J., Lakowicz, J.R., Vogel, S.N., Toshchakov, V.Y. Cell Rep., 2015, 11(12), 1941-52. |
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Unexpected Complex Formation Between Coralyne and Cyclic Diadenosine Monophosphate Providing a Simple Fluorescent Turn-on Assay to Detect This Bacterial Second Messenger. Zhou, J., Sayre, D.A., Zheng, Y., Szmacinski, H., Sintim, H.O. Anal Chem., 2014, 86(5), 2412-20. |
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Binding of Fusion Protein FLSC IgG1 to CCR5 Is Enhanced by CCR5 Antagonist Maraviroc. Latinovic, O., Schneider, K., Szmacinski, H., Lakowicz, J.R., Heredia, A., Redfield, R.R. Antiviral Res., 2014, 112, 80-90. |
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Application of Phasor Plot and Autofluorescence Correction for Study of Heterogeneous Cell Population. Szmacinski, H., Toshchakov, V., Lakowicz, J.R. J Biomed Opt., 2014, 19(4), 046017. |
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DNA Methylation Effects on Tetra-nucleosome Compaction and Aggregation Jimenez-Useche, I., Nurse, N.P., Tian, Y., Kansara, B.S., Shim, D., Yuan, C. Biophys J., 2014, 107(7), 1629-36. |
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Unmethylated and Methylated CpG Dinucleotides Distinctively Regulate the Physical Properties of DNA Jimenez-Useche, I., Shim, D., Yu, J., Yuan, C. Biopolymers., 2014, 101(5), 517-24. |
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mMAPS: A Flow-Proteometric Technique to Analyze Protein-Protein Interactions in Individual Signaling Complexes Chou, C.-K., Lee, H.-H., Tsou, P.-H., Chen, C.-T., Hsu, J.-M., Yamaguchi, H., Wang, Y.-N., Lee, H.-J., Hsu, J. L., Lee, J.-F., Kameoka, J., Hung, M.-C. Sci. Signal., 2014, 7(315), rs1 . |
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Unraveling Transcription Factor Interactions with Heterochromatin Protein 1 Using Fluorescence Lifetime imaging Microscopy and Fluorescence Correlation Spectroscopy Siegel, A.P., Hays, N.M., Day, R.N. J. Biomed. Opt., 2013, 18(2). |
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Chromophore Maturation and Fluorescence Fluctuation Spectroscopy of Fluorescent Proteins in a Cell-free Expression System. Macdonald, P.J.1., Chen, Y., Mueller, J.D. Anal Biochem., 2012, 421(1), 291-8. |
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Monitoring Biosensor Activity in Living Cells with Fluorescence Lifetime Imaging Microscopy Hum, J.M., Siegel, A.P., Pavalko, F.M., Day, R.N. Int. J. Mol. Sci., 2012, 13, 14385-14400. |
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HIV-1 Nef Binds a Subpopulation of MHC-I throughout Its Trafficking Itinerary and Down-regulates MHC-I by Perturbing Both Antegrograde and Retrograde Trafficking Yi, L., Rosales, T., Rose, J.J., Chaudhury, B., Knutson, J.R., Venkatesan, S. J Biol Chem, 2010, 285(40), 30884-30905. |
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Familial Hypertrophic Cardiomyopathy Can Be Characterized by a Specific Pattern of Orientation Fluctuations of Actin Molecules Borejdo, J., Szczesna-Cordary, D., Muthu, P., Calander, N. Biochemistry, 2010, 49, 5269-5277. |
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Estrogen Receptor Ineractions and Dynamics Monitored in Live Cells by Fluorescence Cross-Correlation Spectroscopy Savatier, J., Jalaguier, S., Ferguson, M.L., Cavaille`s, V., Royer, C.A. Biochemistry, 2010, 49, 772-781. |
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Monomer-Dimer Equilibrium in Glutathione Transferases: A Critical Re-Examination Fabrini, R., De Luca, A., Stella, L., Mei, G., Orioni, B., Ciccone, S., Federici, G., Lo Bello, M., Ricci, G. Biochemistry, 2009, 48, 10473-10482. |
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Fluorescence Correlation Spectroscopy of Phophatidylinositol-specific Phospholipase C Monitors the Interplay of Substrate and Activator Lipid Binding Pu, M., Roberts, M.F., Gershenson, A. Biochemistry, 2009, 48(29), 6835-6845. |
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Correlation of Vesicle Binding and Phospholipid Dynamics with Phospholipase C Activity: Insights Into Phosphatidycholine Activation and Surface Dilution Inhibition Pu, M., Fang, X., Redfield, A.G., Gershenson, A., Roberts, M.F. J. of Biol. Chem., 2009, 284(24), 16099-16107. |
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A Fluorescent Mutant of the NM Domain of the Yeast Prion Sup35 Provides insight into Fibril Formation and Stability Palhano, F.L., Rocha, C.B., Bernadino, A., Weissmuller, G., Masuda, C.A., Montero-Lomeli, M., Marco Gomes, A., Chien, P., Fernandes, P.M.B., Foguel, D. Biochemistry, 2009, 48, 6811-6823. |
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Characterization of the Control Catabolite Protein of Gluconeogenic Genes Repressor by Fluorescence Cross-correlation Spectroscopy and Other Biophysical Approaches. Zorrilla, S., Ortega, A., Chaix, D., Alfonso, C., Rivas, G., Aymerich, S., Lillo, M.P., Declerck, N., Royer, C.A. Biophys J., 2008, 95(9), 4403-15. |
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Applications of Dual-Color Fluorescence Cross-Correlation Spectroscopy in Antibody Binding Studies Ruan, Q., Tetin, S.Y. Anal. Biochem., 2008. |
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Endothelial Adhesion Receptors Are Recruited to Adherent Leukocytes by Inclusion in Preformed Tetraspanin Nanoplatforms Barreiro, O., Zamai, M., Yáñez-Mó, M., Tejera, E., López-Romero, P., Monk, P.N., Gratton, E., Caiolfa, V.R., Sánchez-Madrid, F. J. Cell Biol., 2008, 183(3), 527-542. |
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Determining the Stoichiometry of Protein Heterocomplexes in Living Cells With Fluorescence Fluctuation Spectroscopy. Chen, Y.1., Müller, J.D. Proc Natl Acad Sci U S A., 2007, 104(9), 3147-52. |
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Fructose-1,6-bisphosphate Acts Both as an Inducer and as a Structural Cofactor of the Central Glycolytic Genes Repressor (CggR) Zorrilla, S., Chaix, D., Ortega, A., Alfonso, C., Doan, T., Margeat, E., Rivas, G., Aymerich, S., Declerck, N., Royer, C.A. Biochemistry, 2007, 46(51), 14996-15008. |
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Escherichia coli Ribosomal Protein L20 Binds as a Single Monomer to its Own mRNA Bearing Two Potential Binding Sites Allemand, F., Haentjens, J., Chiaruttini, C., Royer, C., Springer, M. Nucleic Acids Research, 2007, 35(9), 3016-3031. |
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Monomer Dimer Dynamics and Distribution of GPI-Anchored uPAR are Determined by Cell Surface Protein Assemblies Caiolfa, V.R., Zamai1, M., Malengo, G., Andolfo, A., Madsen, C.D., Sutin, J., Digman, M.A., Gratton, E., Blasi1, F., Sidenius, N. J. Cell Biol., 2007, 179, 1067-1082. |
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Interactions of Two Monoclonal Antibodies with BNP: High Resolution Epitope Mapping Using Fluorescence Correlation Spectroscopy Tetin, S.Y., Ruan, Q., Saldana, S.C., Pope, M.R., Chen, Y., Wu, H., Pinkus, M.S., Jiang, J., Richardson, P.L. Biochemistry, 2006, 45(47), 14155-65. |
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Effects of Protein-Ligand Associations on the Subunit Interactions of Phosphofructokinase from B. stearothermophilus Quinlan, R.J., Reinhart, G.D. Biochemistry, 2006, 45, 11333-11341. |
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Quantitative Detection of the Ligand-dependent Interaction Between the Androgen Receptor and the Co-activator, Tif2, in Live Cells Using Two Color, Two Photon Fluorescence Cross-correlation Spectroscopy Rosales, T., Georget, V., Malide, D., Smirnov, A., Xu, J., Combs C., Knutson, J.R., Nicolas, J.-C., Royer, C.A. Eur. Biophys. J., 2006. |
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The Nuclear Receptor Coactivator PGC-1α Exhibits Modes of Interaction with the Estrogen Receptor Distinct From those of SRC-1 Bourdoncle, A., Labesse, G., Margueron, R., Castet, A., Cavaillès, V., Royer, C.A. J. Mol. Biol., 2005, 347, 921-934. |
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Phosphoinositide Specificity of and Mechanism of Lipid Domain Formation by Annexin A2-p11 Heterotetramer Gokhale, N.A., Abraham, A., Digman, M.A., Gratton, E., Cho, W. J. Biol. Chem., 2005, 280(52), 42831-42840. |
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Vesicle Encapsulation Studies Reveal that Single Molecule Ribozyme Heterogeneities Are Intrinsic Okumus, B., Wilson, T.J., Lilley, D.M.J., Ha, T. Biophys. J., 2004, 87, 2798-2806. |
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Pleckstrin Homology Domain Diffusion in Dictyostelium Cytoplasm Studied Using Fluorescence Correlation Spectroscopy Ruchira, Hink, M.A., Bosgraaf, L., Van Haastert, P.J.M., Visser, A.J.W.G. The Journal of Biological Chemistry, 2004, 279(11), 10013-10019. |
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Polarized Fluorescence Correlation Spectroscopy of DNA-DAPI Complexes Barcellona, M.L., Gammon, S., Hazlett, T., Digman, M.A., Gratton, E. Microscopy Research and Techniques, 2004, 65, 205-217. |
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Probing Protein Oligomerization in Living Cells With Fluorescence Fluctuation Spectroscopy. Chen, Y.1., Wei, L.N., Müller, J.D. Proc Natl Acad Sci U S A., 2003, 100(26), 15492-7. |
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Segregation of Saturated Chain Lipids in Pulmonary Surfactant Films and Bilayers Nag, K., Pao, J.-S., Harbottle, R.R., Possmayer, F., Petersen, N.O., Bagatolli, L.A. Biophys. J., 2002, 82, 2041-2051. |
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Molecular Heterogeneity of O-Acetylserine Sulfhydrylase by Two-Photon Excited Fluorescence Fluctuation Spectroscopy Chirico, G., Bettati, S., Mozzarelli, A., Chen, Y., Müller, J.D., Gratton, E. Biophys. J., 2001, 80, 1973-1985. |
Diagnostics & Sensing
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Fluorescence Lifetime Imaging of Physiological Free Cu(II) Levels in Live Cells With a Cu(II)-selective Carbonic Anhydrase-based Biosensor. McCranor, B.J., Szmacinski, H., Zeng, H.H., Stoddard, A.K., Hurst, T., Fierke, C.A., Lakowicz, J.R., Thompson, R.B. Metallomics., 2014, 6(5), 1034-42. |
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Determining Antibody Stoichiometry Using Time-Integrated Fluorescence Cumulant Analysis Skinner, J.P., Wu, B., Mueller, J.D., Tetin, S.Y. J. Phys. Chem. B, 2011, 115, 1131-1138. |
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Application of Fluorescence Correlation Spectroscopy to Hapten-Antibody Binding Hazlett, T.L., Ruan, Q., Tetin, S.Y. Methods in Molecular Biology, 2005, 305, 415-438. |
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Antibodies in Diagnostic Applications Tetin, S.Y., Stroupe, S.D. Current Pharmaceutical Biotechnology, 2004, 5, 9-16. |
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Fluorescence Correlation Spectroscopy Assay for Gliadin in Food Varriale, A., Rossi, M., Staiano, M., Terpetschnig, E., Barbieri, B., Rossi, M., D'Auria, S. Anal Chem. 2007, 79(12), 4687-4689. |
Nanomaterials & Surface Physics
N&B (Number and Brightness)
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The Stoichiometry of Scaffold Complexes in Living Neurons - DLC2 Functions as a Dimerization Engine for GKAP. Moutin, E., Compan, V., Raynaud, F., Clerté, C., Bouquier, N., Labesse, G., Ferguson, M.L., Fagni, L., Royer, C.A., Perroy, J. J Cell Sci., 2014, 127(Pt 16), 3451-62. |
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Reconciling Molecular Regulatory Mechanisms with Noise Patterns of Bacterial Metabolic Promoters in Induced and Repressed States Ferguson, M.L., Le Coq, D., Jules, M., Aymerich, S., Ovidiu., R., Declerck, N., Royer, C.A. PNAS, 2012, 109(1), 155-160. |
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Absolute Quantification of Gene Expression in Individual Bacterial Cells Using Two-Photon Fluctuation Microscopy Ferguson, M.L., Le Coq, D., Jules, M., Aymerich, S., Declerck, N., Royer, C.A. Anal Biochem., 2011, 419, 250-259. |
Particle Tracking
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Efficient Parallel Levenberg-Marquardt Model Fitting Towards Real-Time Automated Parametric Imaging Microscopy Zhu, X., Zhang, D. PLoS One., 2013, 8(10), e76665. |
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Nanometer-Scale Optical Imaging of Collagen Fibers Using Gold Nanoparticles Chen, B., Estrada, L.C., Hellriegel, C., Gratton, E. Biomedical Optics Express, 2011(2), 3, 511-519. |
Photon Counting Histogram
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Characterization of Brightness and Stoichiometry of Bright Particles by Flow-fluorescence Fluctuation Spectroscopy. Johnson, J.1., Chen, Y., Mueller, J.D. Biophys J., 2010, 99(9), 3084-92. |
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Fluorescence Correlation Spectroscopy and Photon Counting Histogram on Membrane Proteins: Functional Dynamics of the Glycosylphosphatidylinositol-Anchored Urokinase Plasminogen Activator Receptor Malengo, G., Andolfo, A., Sidenius, N., Gratton, E., Zamai, M., Caiolfa, V.R. J. Biomed. Opt., 2008, 13(3), 031215. |
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Unraveling Protein-Protein Interactions in Living Cells with Fluorescence Fluctuation Brightness Analysis Chen, Y., Wei, L.-N., Müller, J.D. Biophys. J., 2005, 88, 4366-4377. |
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Dual-Color Photon-Counting Histogram Chen, Y., Tekmen, M., Hillesheim, L., Skinner, J., Wu, B., Müller, J.D. Biophys. J., 2005, 88, 2177-2192. |
Plasmonics
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Fluorescence Spectroscopy With Metal-Dielectric Waveguides. Badugu, R., Szmacinski, H., Ray, K., Descrovi, E., Ricciardi, S., Zhang, D., Chen, J., Huo, Y., Lakowicz, J.R. J Phys Chem C Nanomater Interfaces., 2015, 119(28), 16245-16255. |
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Imaging of Protein Secretion from a Single Cell Using Plasmonic Substrates Szmacinski, H., Toshchakov, V., Piao, W., Lakowicz, J.R. BioNanoSci., 2013, 3(1), 30-36. |
General Theory
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Confocal Fluctuation Spectroscopy and Imaging Földes-Papp, Z., Liao, S.-C.J., You, T., Terpetschnig, E., Barbieri, B. Current Pharmaceutical Biotechnology, 2010, 11, 639-653. |
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Fluorescence Fluctuation Spectroscopy: Ushering in a New Age of Enlightenment for Cellular Dynamics Jameson, D.M., Ross, J.A., Albanesi, J.P. Biophys. Rev., 2009. |
Single Molecule Studies and Theory
Super-resolution, Nanoimaging
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Capturing Directed Molecular Motion in the Nuclear Pore Complex of Live Cells Cardarelli, F., Lanzano, L., Gratton, E. PNAS, 2012, 109(25), 9863-9868. |
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Nanometer-scale Imaging by the Modulation Tracking Method Lanzano, L., Digman, M.A., Fwu, P., Giral, H., Levi, M., Gratton, E. J. Biophotonics, 2011, 4(6), 415-424. |
OxiplexTS
Neonatal Applications
| Noninvasive monitoring of red blood cell transfusion in very low birthweight infants using diffuse optical spectroscopy. A. Cerussi, R. Van Woerkom, F. Waffarn and B. Tromberg. J. Biomed. Optics: 10(5), 2005 |
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| Noninvasive monitoring of hemodynamic stress using quantitative near-infrared frequency-domain photon migration spectroscopy. Tuan H. Pham, R. Horniung, H. P. Ha, T. Burney, D. Serna, L. Powell, M. Brenner and B. Tromberg. J. Biomed. Optics: 7(1), 34-44, 2002 |
Neurovascular Surgery - Anesthesiology
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Effect of phenylephrine and ephedrine bolus treatment on cerebral oxygenation in anaesthetized patients. Meng, L., Cannesson, M., Alexander, B.S., Yu, Z., Kain, Z.N., Cerussi, A.E., Tromberg, B.J., Mantulin, W.W. Br J Anaesth. 2011 Aug;107(2):209-17. doi: 10.1093/bja/aer150. Epub 2011 Jun 3. |
| Detection of cerebral ischemia in neurovascular surgery using quantitative frequency-domain near-infrared spectroscopy Mateo Calderon-Arnulphi, MD; Ali Alaraj, MD; sepideh amin-hanjani, MD; william w. mantulin, Ph.d.,2 chiara m. polzonetti, MS; Enrico Gratton, PhD; Fady t. Charbel, MD; J Neurosurg 106:283-290, 2007 |
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Frequency domain near-infrared spectroscopy technique in the assessment of brain oxygenation: A validation study in live subjects and cadavers. Gatto R, Hoffman W, Mueller M, Flores A, Valyi-Nagy T, Charbel FT. J Neurosci Methods. 2006 May 23; [Epub ahead of print] |
| Brain Oxyhemoglobin Stimulation during Intubation William E. Hoffman, Ph.D., Rodolfo Gatto, M.D., Verna L. Baughman, M.D., Fady Charbel, M.D Proceedings of American Society of Anesthesiology: A1034: October 14-18, 2006 |
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| Is Outcome in Neurosurgery Related to Brain Hypoxia? Verna L. Baughman, M.D., Onn Paisansathan, M.D., William E. Hoffman, Ph.D., Rodolfo Gatto, M.D., Fady Charbel, M.D. Proceedings of American Society of Anesthesiology: A55: October 14-18, 2006 |
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| Quantitative Evaluation of Dexmedetomidine Effects on Regional Brain Tissue Oxygenation Rodolfo G. Gatto, M.D., William Hoffman, Ph.D., Verna Baughman, M.D., Fady T. Charbel, M.D. Proceedings of American Society of Anesthesiology: A198: October 14-18, 2006 |
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| Bedside Evaluation of Cerebral Autoregulation Using Frequency Domain Near-Infrared Spectroscopy. Mateo Calderon-Arnulphi, MD; Ali M. Alaraj, MD; Rodolfo G. Gatto, MD; Hrachya Nersesyan, MD; William Mantulin, PhD; Antonios Michalos, MD; Enrico Gratton, PhD; Fady T. Charbel, MD. 55th annual meeting. Congress of Neurological Surgeons October8-13, 2005 |
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| Prediction of Cerebral Ischemia in Neurovascular Surgery. Mateo Calderon-Arnulphi, MD; Gatto Rodolfo, MD; Ali Alaraj, MD; Hrachya Nersesyan, MD; William Mantulin, PhD; Antonios Michalos, MD; Enrico Gratton , PhD; Fady T. Charbel, MD. 55th annual meeting. Congress of Neurological Surgeons October8-13, 2005 |
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| Changes in oxygenation and hemodynamics in the human head assessed by frequency-domain multi-distance NIRS. Michalos, A., M. Calderon, L. P. Safonova, R. Gupta, W. W. Mantulin, E. Gratton. Optical Society of America Biomedical Topics: FE7, 17-19, 2004 |
Brain Studies and Applications in Medicine and Surgery
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Near-infrared measurements of brain oxygenation in stroke. Moreau, F., Yang, R., Nambiar, V., Demchuk, A.M., Dunn, J.F. Neurophotonics. 2016 Jul;3(3):031403. doi: 10.1117/1.NPh.3.3.031403. Epub 2016 Feb 11. |
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Studying cerebral hemodynamics and metabolism using simultaneous near-infrared spectroscopy and transcranial Doppler ultrasound: a hyperventilation and caffeine study. Yang, R., Brugniaux, J., Dhaliwal, H., Beaudin, A.E., Eliasziw, M., Poulin, M.J., Dunn, J.F. Physiol Rep. 2015 Apr;3(4). pii: e12378. doi: 10.14814/phy2.12378. |
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Reduced cortical microvascular oxygenation in multiple sclerosis: a blinded, case-controlled study using a novel quantitative near-infrared spectroscopy method. Yang, R., Dunn, J.F. Sci Rep. 2015 Nov 13;5:16477. doi: 10.1038/srep16477. |
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Coupling Between Arterial Pressure, Cerebral Blood Velocity, and Cerebral Tissue Oxygenation With Spontaneous and Forced Oscillations. Rickards, C.A., Sprick, J.D., Colby, H.B., Kay, V.L., Tzeng, Y.C. Physiol Meas., 2015, 36(4), 785-801. |
| Do women see things differently than men do? Jausovec, N., Jausovec, K. NeuroImage (2008), doi:10.1016/j.neuroimage.2008.11.013 |
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Noninvasive monitoring of red blood cell transfusion in very low birthweight infants using diffuse optical spectroscopy. Cerussi A, Van Woerkom R, Waffarn F, Tromberg B. J Biomed Opt. 2005 Sep-Oct;10(5):051401. PMID: 16292938 |
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Transcranial Doppler and Near-Infrared Spectroscopy Can Evaluate the Hemodynamic Effect of Carotid Artery Occlusion Vernieri F, Tibuzzi F, Pasqualetti P, Rosato N, Passarelli F, Rossini PM, Silvestrini M. Stroke. 2004 Jan;35(1):64-70. Epub 2003 Dec 18 PMID: 14684777 |
| Bilateral near-infrared monitoring of the cerebral concentration and oxygen-saturation of hemoglobin during right unilateral electro-convulsive therapy. F. Fabbri, M. E. Henry, P. F. Renshaw, S. Nadgir, B. L. Ehrenberg, M. A. Franceschini, and S. Fantini. Brain Research 99: 193-204, 2003 |
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Non-invasive determination of optical properties of adult brain with frequency domain near-infrared spectroscopy. Choi, J.H, Wolf, M., Safonova, L.P., Michalos, A., Gratton, E. Optical Society of America Biomedical Topics: SuD33, 144-147, 2002 |
| Non-invasive and quantitative near-infrared hemoglobin spectrometry in the piglet brain during hypoxic stress, using a frequency-domain multi-distance instrument. D. M. Hueber; M A. Franceschini; H. Y. Ma; Q. Zhang; J. R. Ballesteros; S. Fantini; D. Wallace; Ntziachristos; B. Chance. Phys. Med. Biol. 4:, 41-42, 2001. |
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| Investigation of human brain hemodynamics by simultaneous near-infrared spectroscopy and functional magnetic resonance imaging. Toronov, V., A .Webb, J.H. Choi, M. Wolf, A. Michalos, E. Gratton and D. Hueber. Med Phys; 28(4): 521-7, 2001 |
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| Study of local cerebral hemodynamics by frequency-domain near-infrared spectroscopy and correlation with simultaneously acquired functional magnetic resonance imaging. Vladislav Toronov, Andrew Webb, Jee Hyun Choi, Martin Wolf, Larisa Safonova, Ursula Wolf, and Enrico Gratton Optics Express 9(8): 417-427, 2001 |
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| Monitoring Brain Activity Using Near-Infrared Light S. Fantini, P. Aggarwal, K. Chen, and M. A. Franceschini American Laboratory 33(20):15-17, 2001 |
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Cerebral Hemodynamics Measured by Near-Infrared Spectroscopy at Rest and During Motor Activation M. A. Franceschini, S. Fantini, V. Toronov, M. E. Filiaci, E. Gratton OSA In Vivo Optical Imaging Workshop, A. Gandjbakhche ed., (Optical Society of America, Washington, DC 2000), 73-80, 2000. |
| Correlation between oxy-hemoglobin and deoxy-hemoglobin concentration changes in the visual and motor cortex during stimulation and a review of fast functional changes: A near-infrared spectroscopy study. Wolf, M., U. Wolf, V. Toronov, A. Michalos, L.A. Paunescu, J.H. Choi and E. Gratton. Proc. 28th Ann Mtg International Society on Oxygen Transport to Tissue (ISOTT), Ed. B. Oeseburg, Pabst Sci Pub; p:1, 2000 |
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| Near-infrared study of fluctuations in cerebral hemodynamics during rest and motor stimulation: temporal analysis and spatial mapping. Toronov, V., M.A. Franceschini, M. Filiaci, S. Fantini, M. Wolf, A. Michalos and E. Gratton. Med. Phys. 27(4): 801-815, 2000 |
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| Maps of cerebral hemoglobin concentration changes obtained by near-infrared spectroscopy. Characterization of phase shifts among locations Wolf, M., V. Toronov, U. Wolf, L.A. Paunescu, A. Michalos and E. Gratton. Optical Society of America Biomedical Topics: TuF6, 416-418, 2000 |
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| Evaluation of Vascular Steal with Near Infrared Spectroscopy. Choudhury D, Levi M, Fennelly P. J Am Soc Nephrol, A1028, 1999 |
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Near infrared spectroscopy and transcranial Doppler in monohemispheric stroke. Vernieri F, Rosato N, Pauri F, Tibuzzi F, Passarelli F, Rossini PM. Eur Neurol. 1999;41(3):159-62. PMID: 10202248 |
| Measurements of Scattering and Absorption Changes in Muscle and Brain. E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani. Phil. Trans. R. Soc. of Lond. B 35 727-735, 1997. |
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Brain oxygenation monitoring during cardiopulmonary bypass by near infrared spectroscopy. De Blasi RA, Almenrader N, Ferrari M. Adv Exp Med Biol. 1997;413:97-104 PMID: 9238490 |
| Cerebral and muscle oxygen saturation measurement by frequency-domain near-infrared spectrometer. De Blasi, R.A., Fantini, S., Franceschini, M.A., Ferrari, M., and Gratton, E. Med Biol Eng Comput 33, 228-230 (1995). |
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| Cerebral and muscle oxygen saturation measurement by a frequency-domain near-infrared spectroscopic technique. Ferrari, M., De Blasi, R.A., Fantini, S., Franceschini, M.A., Barbieri, B., Quaresima, V., and Gratton, E. Proc. of SPIE, Vol. 2389, (1995), pp. 868-874. |
Brain Imaging (slow signals) on humans
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Cerebral Hemodynamic and Oxygenation Changes Induced by Inner and Heard Speech: A Study Combining Functional Near-infrared Spectroscopy and Capnography. Scholkmann, F., Klein, S.D., Gerber, U., Wolf, M., Wolf, U. J Biomed Opt., 2014, 19(1), 17002. |
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The Effect of Inner Speech on Arterial CO2 and Cerebral Hemodynamics and Oxygenation: A Functional NIRS Study. Scholkmann, F., Wolf, M., Wolf, U. Adv Exp Med Biol., 2013, 789, 81-7. |
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Detection of Motor Execution Using a Hybrid fNIRS-biosignal BCI: A Feasibility Study. Zimmermann, R., Marchal-Crespo, L., Edelmann, J., Lambercy, O., Fluet, M.C., Riener, R., Wolf, M., Gassert, R. J Neuroeng Rehabil., 2013, 10, 4. |
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Assessment of Potential Short-term Effects of Intermittent UMTS Electromagnetic Fields on Blood Circulation in an Exploratory Study, Using Near-infrared Imaging Spichtig, S., Scholkmann, F., Chin, L., Lehmann, H. and Wolf, M. Adv Exp Med Biol, 2012, 737, 83-88. |
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Assessment of Intermittent UMTS Electromagnetic Field Effects on Blood Circulation in the Human Auditory Region Using a Near-infrared System. Spichtig, S., Scholkmann, F., Chin, L., Lehmann, H., Wolf, M. Bioelectromagnetics., 2012, 33(1), 40-54. |
| Functional frequency domain near-infrared spectroscopy detects fast neuronal signal in the motor cortex. Wolf, M., U. Wolf, J.H. Choi, R. Gupta, L.P. Safonova, L. A. Paunescu, A. Michalos and E. Gratton. Neuroimage 17: 1868-1875, 2002 |
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| Different time evolution of oxy-hemoglobin and deoxy-hemoglobin correlation changes in the visual and motor cortices during functional stimulation: A near-infrared spectroscopy study. Wolf, M., U. Wolf, V. Toronov, A. Michalos, L. A. Paunescu, J.H. Choi and E. Gratton. Neuroimage 16: 704-712, 2002 |
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Scalp-recorded optical signals make sound processing in the auditory cortex visible? Rinne T, Gratton G, Fabiani M, Cowan N, Maclin E, Stinard A, Sinkkonen J, Alho K, Naatanen R. Neuroimage. 1999 Nov;10(5):620-4. No abstract available. PMID: 10547339 |
| Real time optical imaging and spectroscopy of brain ischemia and hemorrhage. Stankovic, M., Maulik, D., Stubblefield, P., Rosenfeld, W., Gratton, E., Franceschini, M., and Fantini, S. Proc. of SPIE , Vol. 3597, (1999), pp. 676-684. |
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| Real time optical imaging and spectroscopy of brain ischemia and hemorrhage in neonatal piglets. Stankovic, M., Maulik, D., Rosenfeld, W., Stubblefield, P., Kofinas, A., Drexler, S., Nair, R., Franceschini, M., Hueber, D., Gratton, E., and Fantini, S. J. Perinat. Med., 27: 279-286, 1999 |
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Noninvasive detection of fast signals from the cortex using frequency-domain optical methods. Gratton G, Fabiani M, Corballis PM, Gratton E. Ann N Y Acad Sci. 1997 May 30;820:286-98; discussion 298-9. Review.. PMID: 9237461 |
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Can we measure correlates of neuronal activity with non-invasive optical methods? Gratton G, Fabiani M, Corballis PM. Adv Exp Med Biol. 1997;413:53-62. Review. PMID: 9238485 |
| Non invasive near infrared optical imaging of human brain function with subsecond temporal resolution. Fabiani, M., Gratton, G., and Corballis, P. Journal of Biomedical Optics, Vol. 1 No. 4, (1996.), pp. 387-398 |
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| Rapid Changes of Optical Parameters in the Human Brain during a Tapping Task. Gratton G, Fabiani M, Friedman D, Franceschini MA, Fantini S, Corballis PM, and Gratton E. J. Cogn Neuroscience 7: 446-456,1995 |
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| Shades of grey matter: non invasive optical images of human brain responses during visual stimulation. Gratton, G., Corballis, P., Cho, E., Fabiani, M., and Hood, D. Psychophysiology, Vol. 32, (1995), pp. 505-509. |
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| Feasability of intracranial near infrared optical scanning. Gratton, G., Maier, J., Fabiani, M., Mantulin, W., and Gratton, E. Psychophysiology, Vol. 31, (1994), pp. 211-215. |
Coronary Bypass
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Presence of Coronary Collaterals Is Associated With a Decreased Incidence of Cognitive Decline After Coronary Artery Bypass Surgery. Dieleman, J.1., Sauër, A.M., Klijn, C., Nathoe, H., Moons, K., Kalkman, C., Kappelle, J., Van Dijk, D. Eur J Cardiothorac Surg., 2009, 35(1), 48-53. |
Sleep Studies
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The occurrence of individual slow waves in sleep is predicted by heart rate. Mensen, A., Zhang, Z., Qi, M., Khatami, R. Sci Rep. 2016 Jul 22;6:29671. doi: 10.1038/srep29671. |
| Pattern Analysis of Cerebral Hemodynamics Measured by Near-Infrared Spectroscopy in OSA. CO Olopade, MD, A Michalos, MD, R Gupta, BA, M Lera, PhD, WW Mantulin, PhD, E Gratton, PhD. Proceedings of the American Thoracic Society 3: A705, 2006 |
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| Effect of OSA on Cerebral Blood Flow Using Near-Infrared Spectroscopy. C.O. Olopade, MD, A. Michalos, MD, R. Gupta, BA, E. Mensah, PhD, N. Fossland, BA, D. Picchietti, MD, D. Greeley, MD, S. Manchanda, MD, E. Gratton, PhD. Proceedings of the American Thoracic Society 2: A527, 2005 |
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| Age-correlated changes in cerebral hemodynamics assessed by near-infrared spectroscopy. Safonova, L.P., A. Michalos, U. Wolf, M. Wolf, D.M. Hueber, J.H. Choi, R. Gupta, C. Polzonetti, W.W. Mantulin and E. Gratton. Archives of Gerontology and Geriatrics 39(3): 207-225, 2004 |
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| Near-infrared spectroscopy for the assessment of vascular responsiveness of the brain: A screening method for cerebrovascular morbidity in obstructive sleep apnea. Michalos, A., L.P Safonova, C.S. Olopade, J.H. Choi, W.W. Mantulin, D.M. Hueber, B. Barbieri, E. Gratton. SLEEP 26(suppl): 0983.R, A390-391, 2003 |
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| Near-infrared brain oximetry in obstructive sleep apnea syndrome. Michalos, A., L.P Safonova, J.H. Choi, B. Barbieri, E. Gratton. Sleep Medicine 4(suppl. 1): S31-S32, 2003 |
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Near-infrared spectroscopy and polysomnography during aal-night sleep in human subjects S. Fantini, P. Aggarwal, K. Chen, M. A. Franceschini, and B. L. Ehrenberg Proc. SPIE 5068: 155-162, 2003. |
| Near-infrared spectroscopy for diagnosis and screening of cerebrovascular morbidity in obstructive sleep apnea syndrome. Michalos, A., L.P. Safonova, J.H. Choi, R. Gupta, C. Polzonetti, M. Calderon and E. Gratton. Proceedings, II International Symposium : "Shedding New Light on Disease: Optical Diagnostics for the New Millennium." p. 16, June 23-27, 2002, Reims, France |
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| Evaluation of brain oxygenation and hemodynamics by near-infrared spectroscopy. Michalos, A., L.P. Safonova, U. Wolf, M. Wolf, J.H. Choi, R. Gupta, W.W. Mantulin, D.M. Hueber, B. Barbieri and E. Gratton. Obstructive Sleep Apnea: SLEEP 25(suppl): 547.R, A390-391, 2002 |
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| Reduced cerebral hemodynamic response in sleep disorders: A NIRS frequency domain study. Michalos, A., L.P. Safonova, D.M. Hueber, U. Wolf, M. Wolf, J.H. Choi, R. Gupta, C. Polzonetti, B. Barbieri, W.W. Mantulin and E. Gratton. Optical Society of America, Biomedical Topics: MA1, 248-250, 2002 |
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| Age correlated changes in cerebral hemodynamics assessed by near-infrared spectroscopy. Safonova, L.P., A. Michalos, D.M. Hueber, U. Wolf, M. Wolf, Jee H. Choi, R. Gupta, C. Polzonetti, B. Barbieri, W.W. Mantulin and E. Gratton. Optical Society of America Biomedical Topics: SuD35, 149-151, 2002 |
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| Assessment of cerebral oxygenation and hemodynamics in obstructive sleep apnea syndrome. Michalos, A., L.A. Paunescu, M. Wolf, U. Wolf, V. Toronov, M.A. Franceschini, S. Fantini and E. Gratton. Optical Society of America Biomedical Topics: SuH16, 163-165, 2000 |
Peripheral Vascular Disease (PVD)
| Localized irregularities in hemoglobin flow and oxygenation in the calf muscle in patients with peripheral vascular disease detected by near-infrared spectrophotometry. Wolf, U., M. Wolf, J. H. Choi, M. Levi, D. Choudhury, S. Hull, D. Coussirat, L.A. Paunescu, L.P. Safonova, A. Michalos, W.W. Mantulin and E. Gratton. J Vasc Surg 37(5): 1017-1026, 2003 |
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| Summary of the results of a 95 subject human clinical trial for the diagnosis of peripheral vascular disease using a near infrared frequency domain hemoglobin spectrometer. Wallace, D., Michener, B., Choudhury, D., Levi, M., Fennelly, P., Hueber, D., and Barbieri, B. Proc. of SPIE, Vol. 3597, (1999), pp. 300-316. |
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| Near infrared spectroscopy in the early detection of peripheral vascular disease. Choudhury, D., Michener, B., Fennelly, P., and Levi, M. Journal of Vascular Technol. 23: 109-113, 1999 |
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| Near infrared spectroscopy in the evaluation of lower limb ischemia in hemodialysis patients. Choudhury, D., Michener, B., Fennelly, P., and Levi, M. Journal of Vascular Technol. 23: 21-23, 1999 |
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| Quantitative near infrared spectroscopy on patients with peripheral vascular disease. Franceschini, M. et. al. Proc. of SPIE, Vol. 3194, (1998), pp. 112-115. |
Spinal Cord
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Quantification of Light Reflectance Spectroscopy and Its Application: Determination of Hemodynamics on the Rat Spinal Cord and Brain Induced by Electrical Stimulation. Sharma, V.1., He, J.W., Narvenkar, S., Peng, Y.B., Liu, H. Neuroimage., 2011, 56(3), 1316-28. |
Muscle Studies
| Cerebral and muscle oxygen saturation measurement by a frequency-domain near-infrared spectroscopic technique. Ferrari, M., De Blasi, R.A., Fantini, S., Franceschini, M.A., Barbieri, B., Quaresima, V., and Gratton, E. Proc. of SPIE, Vol. 2389, (1995), pp. 868-874. |
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| Cerebral and muscle oxygen saturation measurement by frequency-domain near-infrared spectrometer. De Blasi, R.A., Fantini, S., Franceschini, M.A., Ferrari, M., and Gratton, E. Med Biol Eng Comput 33: 228-230,1995 |
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| In vivo study of human tissues with a portable near-infrared tissue spectrometer. Maier, J.S., Barbieri, B., Chervu, A., Chervu, I., Fantini, S., Franceschini, M.A., Levi, M., Mantulin, W.W., Rosenberg, A., Walker, S.A., and Gratton, E. Proc. of SPIE, Vol. 2387, (1995), pp. 240-248. |
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| Quadriceps oxygenation changes during walking and running on a treadmill. Quaresima, V., Pizzi, A., De Blasi, R., Ferrari, A., and Ferrari, M. Proc. of SPIE, Vol. 2387, (1995), pp. 249-256. |
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O2 consumption-O2 delivery relationship and arteriolar resistance in the forearm of critically ill patients measured by near infrared spectroscopy. De Blasi RA, Ferrari M, Antonelli M, Conti G, Almenrader N, Gasparetto A. Shock. 1996 Nov;6(5):319-25. PMID: 8946645 |
| Oxidative metabolism in muscle. M. Ferrari, T. Binzoni, V. Quaresima, Philosophical Transactions of the Royal Society B: Biological Sciences. 352(1354): 677 - 683, 1997 |
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| Difference in leg muscles oxygenation during treadmill exercise by a new near infrared frequency domain oximeter. Quaresima, V., Franceschini, M.A., Fantini, S., Gratton, E., and Ferrari, M. Proc. SPIE, Vol. 3194, (1998), pp. 116-120. |
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| Comparison between near-infrared oximetry and 99mTc-HMPAO uptake in the resting peripheral muscle under normobaric normoxia and hypobaric hypoxia Marco Pagani, Ralf Ansjon, Folke Lind, Cathrine Jonsson, Johan Uusijarvi, Gamze Sumen, Hans Jacobsson, Stig A. Larsson. Proceedings of SPIE. 3194: 151-158, 1998 |
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| Calf muscle blood flow and oxygen consumption measured with near infrared spectroscopy during venous occlusion. Paunescu, L.A., Casavola, C., Franceschini, M.A., Fantini, S., Winter, L., Kim, J., Wood, D., Gratton, E. SPIE Proc., Vol. 3597, (1999), pp. 317-323. |
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| Scattering coefficient-hemoglobin concentration relation determined by frequency-domain spectroscopy during venous occlusion. Paunescu, L.A., U. Wolf, M. Wolf, A. Michalos and E. Gratton. Optical Society of America Biomedical Topics: TuD2, 363-365, 2000 |
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| Mapping of oxy-hemoglobin and deoxy-hemoglobin changes of the human calf during venous occlusion. Wolf, U., M. Wolf, J.H. Choi, L.A. Paunescu, A. Michalos, V. Toronov and E. Gratton. Proc. 28th Ann Mtg International Society on Oxygen Transport to Tissue (ISOTT), Ed. B. Oeseburg, Pabst Sci Pub; p:5, 2000 |
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| Mapping of hemodynamics on the human calf with near infrared spectroscopy and the influence of the adipose tissue thickness. Wolf, U., M. Wolf, J.H. Choi, L.A. Paunescu, L.P. Safonova, A. Michalos and E. Gratton. Adv Exp Med Biol 510: 225-230, 2003 |
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Spatial distribution of vastus lateralis blood flow and oxyhemoglobin saturation measured at the end of isometric quadriceps contraction by multi-channel near-infrared spectroscopy. Quaresima V, Ferrari M, Franceschini MA, Hoimes ML, Fantini S. J Biomed. Optics 9(2): 413-20, 2004 |
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Microvascular dysfunction and skeletal muscle oxygenation assessed by phase-modulation near-infrared spectroscopy in patients with septic shock. De Blasi RA, Palmisani S, Alampi D, Mercieri M, Romano R, Collini S, Pinto G. Intensive Care Med. 2005 Dec;31(12):1661-8. Epub 2005 Oct 5. PMID: 16205889 |
| Effects of fibre orientation, myoglobin redox form, and postmortem storage on NIR tissue oximeter mearuments of beef longissimus muscle Mohan, A., Hunt, M.C., Barstow, T.J., Houser, T.A., Bopp, C., Hueber, D.M Meat Science 84 (2010) 79-85 |
Sport Medicine
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Acute supplementation of N-acetylcysteine does not affect muscle blood flow and oxygenation characteristics during handgrip exercise. Smith, J.R., Broxterman, R.M., Ade, C.J., Evans, K.K., Kurti, S.P., Hammer, S.M., Barstow, T.J., Harms, C.A. Physiol Rep. 2016 Apr;4(7). pii: e12748. doi: 10.14814/phy2.12748. |
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The interrelationship between muscle oxygenation, muscle activation, and pulmonary oxygen uptake to incremental ramp exercise: influence of aerobic fitness. Boone, J., Barstow, T.J., Celie, B., Prieur, F., Bourgois, J. Appl Physiol Nutr Metab. 2016 Jan;41(1):55-62. doi: 10.1139/apnm-2015-0261. Epub 2015 Oct 6. |
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Discrepancy between femoral and capillary blood flow kinetics during knee extension exercise. Schlup, S.J., Ade, C.J., Broxterman, R.M., Barstow, T.J. Respir Physiol Neurobiol. 2015 Dec;219:69-77. doi: 10.1016/j.resp.2015.08.005. Epub 2015 Aug 21. |
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The effect of resting blood flow occlusion on exercise tolerance and W'. Broxterman, R.M., Craig, J.C., Ade, C.J., Wilcox, S.L., Barstow, T.J. Am J Physiol Regul Integr Comp Physiol. 2015 Sep 15;309(6):R684-91. doi: 10.1152/ajpregu.00283.2015. Epub 2015 Jul 29. |
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Influence of blood flow occlusion on the development of peripheral and central fatigue during small muscle mass handgrip exercise. Broxterman, R.M., Craig, J.C., Smith, J.R., Wilcox, S.L., Jia, C., Warren, S., Barstow, T.J. J Physiol. 2015 Sep 1;593(17):4043-54. doi: 10.1113/JP270424. Epub 2015 Aug 2. |
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Influence of blood flow occlusion on muscle oxygenation characteristics and the parameters of the power-duration relationship. Broxterman, R.M., Ade, C.J., Craig, J.C., Wilcox, S.L., Schlup, S.J., Barstow, T.J. J Appl Physiol (1985). 2015 Apr 1;118(7):880-9. doi: 10.1152/japplphysiol.00875.2014. Epub 2015 Feb 5. |
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The impact of pedal rate on muscle oxygenation, muscle activation and whole-body VOâ‚‚ during ramp exercise in healthy subjects. Boone, J., Barstow, T.J., Celie, B., Prieur, F., Bourgois, J. Eur J Appl Physiol. 2015 Jan;115(1):57-70. doi: 10.1007/s00421-014-2991-x. Epub 2014 Sep 10. |
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Influence of duty cycle on the power-duration relationship: observations and potential mechanisms. Broxterman, R.M., Ade, C.J., Wilcox, S.L., Schlup, S.J., Craig, J.C., Barstow, T.J. Respir Physiol Neurobiol. 2014 Feb 1;192:102-11. doi: 10.1016/j.resp.2013.11.010. Epub 2013 Dec 17. |
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Relationship between brachial artery blood flow and total [hemoglobin+myoglobin] during post-occlusive reactive hyperemia. Bopp, C.M., Townsend, D.K., Warren, S., Barstow, T.J. Microvasc Res. 2014 Jan;91:37-43. doi: 10.1016/j.mvr.2013.10.004. Epub 2013 Nov 2. |
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Forearm muscle oxygenation responses during and following arterial occlusion in patients with mitochondrial myopathy. Boone, J., Celie, B., Dumortier, J., Barstow, T.J., De Bleecker, J., Smet, J., Van Lander, A., Van Coster, R., Bourgois, J. Respir Physiol Neurobiol. 2014 Jan 1;190:70-5. doi: 10.1016/j.resp.2013.09.007. Epub 2013 Sep 23. |
| Pattern of deoxy{Hb + Mb} during ramp cycle exercise: Influence of aerobic fitness status. Boone, J, Koppo, K, Barstow, T, Bouckaert, J. Eur. J. Appl. Physiol. 105(6): 851-859, 2009 |
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| Muscle microvascular hemoglobin concentration and oxygenation within the contraction-relaxation cycle Lutjemeier, B.J., Ferreira, L.F., Poole, D.C., Townsend, D., Barstow, T.J Respiratory Physiology & Neurobiology 160 (2008) 131-138 |
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| Frequency Analysis of Muscle Contraction and NIRS Variables: Implications for Tissue Gas Exchange Lutjemeier, Barbara J.; Ferreira, Leonardo F.; Townsend, Dana K.; Barstow, Thomas J. Medicine & Science in Sports & Exercise. 38(5) Supplement: S248, 2006 |
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Human femoral artery and estimated muscle capillary blood flow kinetics following the onset of exercise. Harper AJ, Ferreira LF, Lutjemeier BJ, Townsend DK, Barstow TJ. Exp Physiol. 2006 Jul;91(4):661-71. Epub 2006 Mar 23. PMID: 16556660 |
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Effects of pedal frequency on estimated muscle microvascular O2 extraction. Ferreira LF, Lutjemeier BJ, Townsend DK, Barstow TJ. Eur J Appl Physiol. 2006 Mar;96(5):558-63. Epub 2005 Dec 21. PMID: 16369819 |
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Kinetics of restoration of arteriolar tone after exercise. Barstow TJ, Lutjemeier BJ, Ferreira LF. J Appl Physiol. 2005 Aug;99(2):775. No abstract available. PMID: 16020445 |
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Kinetics of estimated human muscle capillary blood flow during recovery from exercise. Ferreira LF, Harper AJ, Townsend DK, Lutjemeier BJ, Barstow TJ. Exp Physiol. 2005 Sep;90(5):715-26. Epub 2005 May 20. PMID: 15908509 |
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Dynamics of skeletal muscle oxygenation during sequential bouts of moderate exercise. Ferreira LF, Lutjemeier BJ, Townsend DK, Barstow TJ. Exp Physiol. 2005 May;90(3):393-401. Epub 2005 Feb 11. PMID: 15708875 |
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Muscle contraction-blood flow interactions during upright knee extension exercise in humans. Lutjemeier BJ, Miura A, Scheuermann BW, Koga S, Townsend DK, Barstow TJ. J Appl Physiol. 2005 Apr;98(4):1575-83. Epub 2004 Nov 19. PMID: 15557016 |
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Muscle capillary blood flow kinetics estimated from pulmonary O2 uptake and near-infrared spectroscopy. Ferreira LF, Townsend DK, Lutjemeier BJ, Barstow TJ. J Appl Physiol. 2005 May;98(5):1820-8. Epub 2005 Jan 7. PMID: 15640391 |
| Muscle Oxygenation during Incremental Exercise and Recovery: Implications of Assuming Constant Scattering Ferreira, Leonardo Franklin; Hueber, Dennis M.; Lutjemeier, Barbara J.; Townsend, Dana K.; Barstow, Thomas Medicine & Science in Sports & Exercise. 37(5) Supplement May 2005 p S361 |
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| The Influence of Adipose Tissue Thickness on Near-Infrared Spectrometry during Intra-contraction Knee Extension Exercise Townsend, Dana; Ferreira, Leonardo; Lutjemeier, Barbara; Barstow, Thomas Medicine & Science in Sports & Exercise. 36(5) Supplement May 2004 p S23 |
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Differences in the oxygenation of the forearm muscle during isometric contraction in trained and untrained subjects. Usaj A. Cell Mol Biol Lett. 7(2):375-7, 2002 |
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The endurance training effect on the oxygenation status of an isometrically contracted forearm muscle Anton Usaj Pflügers Archiv European Journal of Physiology 442 (7): r155-r156, 2001 |
Animal Studies
| Lagged covariance structure models for studying functional connectivity in the brain E. Rykhlevskaia, M. Fabiani, and G. Gratton NeuroImage, 30, 1203-1218 (2006). |
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Near-infrared frequency-domain optical spectrometry (NIRS) and magnetic resonance imaging (MRI): a combined approach to studying cerebral maturation of neonatal rabbits. D'Arceuil HE, Hotakainen MP, Liu C, Themelis G, deCrespigny AJ, Franceschini MA. Journal of Biomedical Optics 10(1): 011011. 2005. |
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Human arginase II: crystal structure and physiological role in male and female sexual arousal. Cama E, Colleluori DM, Emig FA, Shin H, Kim SW, Kim NN, Traish AM, Ash DE, Christianson DW. Biochemistry. 2003 Jul 22;42(28):8445-51. PMID: 12859189 |
| Near-Infrared Spiroximetry: Non-Invasive Measurement of Venous Saturation in Piglets and Human Subjects. M. A. Franceschini, D. A. Boas, A. Zourabian, S. G. Diamond, S. Nadgir, D. W. Lin, J. B. Moore, and S. Fantini, J. Appl. Physiol. 92: 2-384, 2002. |
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Hemodynamic evaluation of the female sexual arousal response in an animal model. Min K, Munarriz R, Berman J, Kim NN, Goldstein I, Traish AM, Stankovic MR. J Sex Marital Ther. 2001 Oct-Dec;27(5):557-65. PMID: 11554219 |
| Role of frequency domain optical spectroscopy in the detection of neonatal brain hemorrhage - A newborn piglet study. Stankovic, MR., Maulik D., Rosenfeld, W., Stubblefield, PG., Kofinas, AD., Gratton, E., Franceschini, MA., Fantini, S., and Hueber, D. J Matern. Fetal Med. 9: 2-149, 2000. |
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| Non-invasive optical mapping of the piglet brain in real time. S. Fantini, M.A. Franceschini, E. Gratton, D. Hueber, W. Rosenfeld, D. Maulik, P. Stubblefield, M.R. Stankovic; Optics Express. 4(8), 308-314, 1999. |
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| Non-Invasive Optical Monitoring of the Newborn Piglet Brain Using Continuous-Wave and Frequency-Domain Methods S. Fantini, D. Hueber, M. A. Franceschini, E. Gratton, W. Rosenfeld, P. G. Stubblefield, D. Maulik, and M. R. Stankovic. Phys. Med. Biol. 44:1543-1563, 1999 |
Food Science
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Effects of fibre orientation, myoglobin redox form, and postmortem storage on NIR tissue oximeter measurements of beef longissimus muscle. Mohan, A., Hunt, M.C., Barstow, T.J., Houser, T.A., Bopp, C., Hueber, D.M. Meat Sci. 2010 Jan;84(1):79-85. doi: 10.1016/j.meatsci.2009.08.024. Epub 2009 Aug 14. |
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Near-infrared oximetry of three post-rigor skeletal muscles for following myoglobin redox forms Mohan, A, Hunt, M.c., Barstow, T.J., Houser, T.A., Hueber, D.M. Food Chemistry 2010 Vol.123 No.2 pp.456-464 ref.28. |
Instrumentation and Methods
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A Brief Review on the History of Human Functional Near-Infrared Spectroscopy (fNIRS) Development and Fields of Application Ferrari, M., and Quaresima, V. NeuroImage, 2012. |
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Modulation of an optical needle's reflectivity alters the average photon path through scattering media Paul Simonson, Enrico D'Amico, and Enrico Gratton J. Biomed. Opt. 11(1): 14023-31, 2006 |
| Absolute Near-Infrared Brain Oximeter. Michalos A, Gupta R, Safonova LP, Lera M, Olopade CO, Mantulin WW, Hueber DM, Barbieri B, Picchietti D, Greeley D, Gratton E. 7th Annual NIH SBIR/STTR Conference. July 28-29, 2005 |
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| Multi-source phased-array approach to improve the spatial resolution in frequency-domain diffuse optical imaging Ning Liu Zucker, M. Fantini, S. Lasers and Electro-Optics May 2004 Volume: 2, 3 pp. |
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| Optical measurements of absorption changes in two-layered diffusive media F. Fabbri, A. Sassaroli, M. E. Henry, and S. Fantini. Phys. Med. Biol. 49: 1183-1201, 2004 |
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| Noninvasive determination of the optical properties of adult brain: Near infrared spectroscopy approach. Jee Hyun Choi, Martin Wolf, Vlad Toronov, Ursula Wolf, Chiara Polzonetti, Dennis Hueber, Larisa P. Safonova, Rajarsi Gupta, Antonios Michalos, William Mantulin, and Enrico Gratton. J Biomed Opt. 9(1): 221-9, 2004 |
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| Absolute frequency-domain pulse oximetry of the brain: Methodology and measurements. Wolf, M., M.A. Franceschini, L.A. Paunescu, V. Toronov, A. Michalos, U. Wolf, E. Gratton and S. Fantini. Adv Exp Med Biol 530: 61-73, 2003 |
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| In vitro correlation between reduced scattering coefficient and hemoglobin of human blood determined by near-infrared spectroscopy Paunescu, L.A., A. Michalos, J. H. Choi, U. Wolf, M. Wolf and E. Gratton. SPIE Proc. 4250: 319-326, 2001 |
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| Noninvasive optical method of measuring tissue and arterial saturation: an application to absolute pulse oximetry of the brain. M. A. Franceschini, E. Gratton, and S. Fantini Opt. Lett. 24: 829-83, 1999 |
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| Near infrared absorption and scattering spectra of tissues in vivo. Franceschini, M.A., Gratton, E., Hueber, D., and Fantini, S. SPIE Proc., Vol. 3597, (1999), pp. 526-531. |
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| Near infrared spectroscopy and the tilting table protocol: a novel method to study the blood flow and the oxygen consumption in tissues. Casavola, C., Paunescu, L.A., Franceschini, M.A., Fantini, S., Winter, L., Kim, J., Wood, D., Gratton, E. Proc. Of SPIE, Vol. 3597, (1999), pp. 685-692. |
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| New optical probe designs for absolute self calibrating NIR tissue hemoglobin measurements. Hueber, D., Fantini, S., Cerussi, A., and Barbieri, B. Proc. of SPIE, Vol. 3597, (1999), pp. 618-631. |
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| Frequency-Domain Optical Measurements in Vitro on Two- and Three-Layered Tissue-Like Phantoms and in Vivo on Infant Heads M. A. Franceschini, A. Paunescu, S. Fantini, S. Pratesi, J. S. Maier, G. P. Donzelli, and E. Gratton. OSA Trends in Optics and Photonics on Advances in Optical Imaging and Photon Migration, J. G. Fujimoto and M. Patterson, eds., (Optical Society of America, Washington, DC 1998), Vol XXI, pp. 232-236. |
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| Influence of a superficial layer in the quantitative spectroscopic study of strongly scattering media. Franceschini, M.A., Fantini, S., Paunescu, L.A., Maier, J., and Gratton, E. Applied Optics, Vol. 37, No. 1, (1998), pp. 7447-7458. |
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| Quantitative spectroscopic determination of hemoglobin concentration and saturation in a turbid medium: analysis of the effect of water absorption. Franceschini, M. A., Fantini, S., Cerussi, A., Barbieri, B., Chance B., and Gratton, E. J. of Biomed. Opt., Vol. 2, (1997), pp. 147-153. |
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| Optical Study of the skeletal muscle during exercise with a second generation frequency-domain tissue oximeter. Franceschini, M. A., Wallace, D., Barbieri, B., Fantini, S., Mantulin, W.W., Pratesi S., Donzelli, G.P., and Gratton, E. Proc. of SPIE, Vol. 2979, (1997), pp. 807-814. |
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| Frequency-domain multichannel optical detector for non-invasive tissue spectroscopy and oximetry. Fantini, S., Franceschini, M.A., Maier, J.S., Walker, S.A., Barbieri, B., and Gratton, E. Opt. Eng. 34: 32-42, 1995 |
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Frequency-Domain Method for Determining Spectral Properties in Multiply Scattering Media: Methemoglobin Absorption Spectrum in a Tissue-Like Phantom. Fishkin JB, So PTC, Cerussi AE, Fantini S, Franceschini MA, and Gratton E. Appl Opt 34: 1143- 1155, 1995 |
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Semi- Infinite-Geometry Boundary Problem for Light Migration in Highly Scattering Media: a Frequency- Domain Study in the Diffusion Approximation. Fantini S, Franceschini MA, and Gratton E. B11: 2128-2138, 1994 |
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Possible Correlation between Blood Glucose Concentration and Reduced Scattering Coefficient of Tissues in the Near-Infrared. Maier JS, Walker SA, Fantini S, Franceschini MA and Gratton E. Opt Lett 19: 2062-2064, 1994 |
| Quantitative determination of the absorption spectra of chromophores in strongly scattering media: a light-emitting-diode based technique. Fantini, S., Franceschini, M.A., Fishkin, J.B., Barbieri, B., and Gratton, E. Applied Optics 33: 5204-5213, 1994 |
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Feasibility of intracranial near-infrared optical scanning. Gratton G, Maier JS, Fabiani M, Mantulin WW, Gratton E. Psychophysiology. 1994 Mar;31(2):211-5. PMID: 8153259 |
General Physiology
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The role of cerebral oxygenation and regional cerebral blood flow on tolerance to central hypovolemia. Kay, V.L., Rickards, C.A. Am J Physiol Regul Integr Comp Physiol. 2016 Feb 15;310(4):R375-83. doi: 10.1152/ajpregu.00367.2015. Epub 2015 Dec 16. |
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Reproducibility of a continuous ramp lower body negative pressure protocol for simulating hemorrhage. Kay, V.L., Rickards, C.A. Physiol Rep. 2015 Nov;3(11). pii: e12640. doi: 10.14814/phy2.12640. |
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Coupling between arterial pressure, cerebral blood velocity, and cerebral tissue oxygenation with spontaneous and forced oscillations. Rickards, C.A., Sprick, J.D., Colby, H.B., Kay, V.L., Tzeng, Y.C. Physiol Meas. 2015 Apr;36(4):785-801. doi: 10.1088/0967-3334/36/4/785. Epub 2015 Mar 23. |
Imagent
fNIRS
Cognitive Neuroscience
Auditory Cortex
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The Role of Visual and Auditory Temporal Processing for Chinese Children With Developmental Dyslexia Chung, K.K., McBride-Chang, C., Wong, S.W., Cheung, H., Penney, T.B., Ho, C.S. Ann Dyslexia., 2008, 58(1), 15-35. |
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On the Functional Role of Temporal and Frontal Cortex Activation in Passive Detection of Auditory Deviance Tse, C.Y., Penney, T.B. Neuroimage., 2008, 41(4), 1462-70. |
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Optical Imaging of Temporal Integration in Human Auditory Cortex Sable, J.J., Low, K.A., Whalen, C.J., Maclin, E.L., Fabiani, M., Gratton, G. Eur J Neurosci., 2007, 25(1), 298-306. |
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Latent Inhibition Mediates N1 Attenuation to Repeating Sounds Sable, J.J., Low, K.A., Maclin, E.L., Fabiani, M., Gratton, G. Psychophysiology., 2004, 41(4), 636-42. |
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Scalp-Recorded Optical Signals Make Sound Processing in the Auditory Cortex Visible Rinne, T., Gratton, G., Fabiani, M., Cowan, N., Maclin, E., Stinard, A., Sinkkonen, J., Alho, K., Näätänen, R. NeuroImage, 1999, 10, 620-624. |
Motor Cortex
Visual Cortex
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Early Childhood Development of Visual Texture Segregation in Full-term and Preterm Children. Sayeur, M.S., Vannasing, P., Lefrançois, M., Tremblay, E., Lepore, F., Lassonde, M., McKerral, M., Gallagher, A. Vision Res., 2015, 112, 1-10. |
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Comparison of Neuronal and Hemodynamic Measures of the Brain Response to Visual Stimulation: An Optical Imaging Study. Gratton, G., Goodman-Wood, M.R., Fabiani, M. Hum Brain Mapp., 2001, 13(1), 13-25. |
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Shades of Gray Matter: Noninvasive Optical Images of Human Brain Responses During Visual Stimulation. Gratton, G., Corballis, P.M., Cho, E., Fabiani, M., Hood, D.C. Psychophysiology., 1995, 32(5), 505-9. |
Language Center
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Distinct Hemispheric Specializations for Native and Non-native Languages in One-day-old Newborns Identified by fNIRS Vannasing, P., Florea, O., González-Frankenberger, B., Tremblay, J., Paquette, N., Safi, D., Wallois, F., Lepore, F., Béland, R., Lassonde, M., Gallagher, A. Neuropsychologia., 2016, 84, 63-9. |
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Developmental Patterns of Expressive Language Hemispheric Lateralization in Children, Adolescents and Adults Using Functional Near-infrared Spectroscopy Paquette, N., Lassonde, M., Vannasing, P., Tremblay, J., González-Frankenberger, B., Florea, O., Béland, R., Lepore, F., Gallagher, A. Neuropsychologia., 2015, 68, 117-25. |
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Early Electrophysiological Markers of Atypical Language Processing in Prematurely Born Infants Paquette, N., Vannasing, P., Tremblay, J., Lefebvre, F., Roy, M.S., McKerral, M., Lepore, F., Lassonde, M., Gallagher, A. Neuropsychologia., 2015, 79(Pt A), 21-32. |
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Functional Near-infrared Spectroscopy for the Assessment of Overt Reading Safi, D., Lassonde, M., Nguyen, D.K., Vannasing, P., Tremblay, J., Florea, O., Morin-Moncet, O., Lefrançois, M., Béland, R. Brain Behav., 2012, 2(6), 825-37. |
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Near-infrared Spectroscopy as an Alternative to the Wada Test for Language Mapping in Children, Adults and Special Populations Gallagher, A., Thériault, M., Maclin, E., Low, K., Gratton, G., Fabiani, M., Gagnon, L., Valois, K., Rouleau, I., Sauerwein, H.C., Carmant, L., Nguyen, D.K., Lortie, A., Lepore, F., Béland, R., Lassonde, M. Epileptic Disord., 2007, 9(3), 241-55. |
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Speeded Naming and Dyslexia Penney, T.B., Wong, S., Ng, K.K., McBride-Chang, C.A. Communicating Skills of Intention, 2007, 75-90. |
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Morphological Structure Awareness, Vocabulary, and Reading McBride-Chang, C., Hua, S., Ng, J.Y.L., Meng, X., Penney, T.B. Vocabulary Acquisition: Implications for Reading Comprehension, 2007, 6, 104-122. |
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Poor Readers of Chinese Respond Slower Than Good Readers in Phonological, Rapid Naming, and Interval Timing Tasks Penney, T.B., Leung, K.M., Chan, P.C., Meng, X., McBride-Chang, C.A. Ann Dyslexia., 2005, 55(1), 9-27. |
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Brain Responses to Segmentally and Tonally Induced Semantic Violations in Cantonese Schirmer, A., Tang, S.L., Penney, T.B., Gunter, T.C., Chen, H.C. J Cogn Neurosci., 2005, 17(1), 1-12. |
Physiological Monitoring
Aging Studies
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Taking the Pulse of Aging: Mapping Pulse Pressure and Elasticity in Cerebral Arteries With Optical Methods Fabiani, M., Low, K.A., Tan, C.H., Zimmerman, B., Fletcher, M.A., Schneider-Garces, N., Maclin, E.L., Chiarelli, A.M., Sutton, B.P., Gratton, G. Psychophysiology., 2014, 51(11), 1072-88. |
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Multiple Electrophysiological Indices of Distinctiveness Fabiani, M. Distinctiveness and Memory, 2006, 339-360. |
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Reduced Suppression or Labile Memory? Mechanisms of Inefficient Filtering of Irrelevant Information in Older Adults Fabiani, M., Low, K.A., Wee, E., Sable, J.J., Gratton, G. J Cogn Neurosci., 2006, 18(4), 637-50. |
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Contributions of Cognitive Neuroscience to the Understanding of Behavior and Aging Kramer, A.F., Fabiani, M., Colcombe, S. Handbook of the Psychology of Aging, Sixth Edition, 2006, 6, 57-83. |
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Electrophysiological and Optical Measures of Cognitive Aging Fabiani, M., Gratton, G. Cognitive Neuroscience of Aging: Linking Cognitive and Cerebral Aging, 2005. |
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Sensory ERPs Predict Differences in Working Memory Span and Fluid Intelligence Brumback, C.R., Low, K.A., Gratton, G., Fabiani, M. Neuroreport., 2004, 15(2), 373-6. |
Epilepsy Studies
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Potential Brain Language Reorganization in a Boy With Refractory Epilepsy; An fNIRS-EEG and fMRI Comparison. Vannasing, P., Cornaggia, I., Vanasse, C., Tremblay, J., Diadori, P., Perreault, S., Lassonde, M., Gallagher, A. Epilepsy Behav Case Rep., 2016, 5, 34-7. |
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Recruitment of the Left Precentral Gyrus in Reading Epilepsy: A Multimodal Neuroimaging Study. Safi, D., Béland, R., Nguyen, D.K., Pouliot, P., Mohamed, I.S., Vannasing, P., Tremblay, J., Lassonde, M., Gallagher, A. Epilepsy Behav Case Rep., 2016, 5, 19-22. |
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Using Patient-specific Hemodynamic Response Function in Epileptic Spike Analysis of Human Epilepsy: A Study Based on EEG-fNIRS. Peng, K., Nguyen, D.K., Vannasing, P., Tremblay, J., Lesage, F., Pouliot, P. Neuroimage., 2016, 126, 239-55. |
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Hemodynamic Changes During Posterior Epilepsies: An EEG-fNIRS Study. Pouliot, P., Tran, T.P., Birca, V., Vannasing, P., Tremblay, J., Lassonde, M., Nguyen, D.K. Epilepsy Res., 2014, 108(5), 883-90. |
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fNIRS-EEG Study of Focal Interictal Epileptiform Discharges. Peng, K., Nguyen, D.K., Tayah, T., Vannasing, P., Tremblay, J., Sawan, M., Lassonde, M., Lesage, F., Pouliot, P. Epilepsy Res., 2014, 108(3), 491-505. |
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Noninvasive Continuous Functional Near-infrared Spectroscopy Combined With Electroencephalography Recording of Frontal Lobe Seizures. Nguyen, D.K., Tremblay, J., Pouliot, P., Vannasing, P., Florea, O., Carmant, L., Lepore, F., Sawan, M., Lesage, F., Lassonde, M. Epilepsia., 2013, 54(2), 331-40. |
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Nonlinear Hemodynamic Responses in Human Epilepsy: A Multimodal Analysis With fNIRS-EEG and fMRI-EEG. Pouliot, P., Tremblay, J., Robert, M., Vannasing, P., Lepore, F., Lassonde, M., Sawan, M., Nguyen, D.K., Lesage, F. J Neurosci Methods., 2012, 204(2), 326-40. |
Applications to Infants
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Perception of Caucasian and African faces in 5- to 9-month-old Caucasian infants: A functional near-infrared spectroscopy study. Timeo, S., Brigadoi, S., Farroni, T. Neuropsychologia. 2017 Sep 13. pii: S0028-3932(17)30337-8. doi: 10.1016/j.neuropsychologia.2017.09.011. [Epub ahead of print] |
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Infant cortex responds to other humans from shortly after birth. Farroni, T., Chiarelli, A.M., Lloyd-Fox, S., Massaccesi, S., Merla, A., Di Gangi, V., Mattarello, T., Faraguna, D., Johnson, M.H. Sci Rep. 2013 Oct 4;3:2851. doi: 10.1038/srep02851. |
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Coupled Oxygenation Oscillation Measured by NIRS and Intermittent Cerebral Activation on EEG in Premature Infants. Roche-Labarbe, N., Wallois, F., Ponchel, E., Kongolo, G., Grebe, R. Neuroimage., 2007, 36(3), 718-27. |
Studies of the Brain
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Measurement of Brain Activity by Near-infrared Light Gratton, E., Toronov, V., Wolf, U., Wolf, M., Webb, A. J Biomed Opt., 2005, 10(1), 11008. |
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Noninvasive Determination of the Optical Properties of Adult Brain: Near-infrared Spectroscopy Approach Choi, J., Wolf, M., Toronov, V., Wolf, U., Polzonetti, C., Hueber, D., Safonova, L.P., Gupta, R., Michalos, A., Mantulin, W., Gratton, E. J Biomed Opt., 2004, 9(1), 221-9. |
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Fast Cerebral Functional Signal in the 100-ms Range Detected in the Visual Cortex by Frequency-domain Near-infrared Spectrophotometry Wolf, M., Wolf, U., Choi, J.H., Toronov, V., Paunescu, L.A., Michalos, A., Gratton, E. Psychophysiology., 2003, 40(4), 521-8. |
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Absolute Frequency-domain Pulse Oximetry of the Brain: Methodology and Measurements Wolf, M., Franceschini, M.A., Paunescu, L.A., Toronov, V., Michalos, A., Wolf, U., Gratton, E., Fantini, S. Adv Exp Med Biol., 2003, 530, 61-73. |
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Different Time Evolution of Oxyhemoglobin and Deoxyhemoglobin Concentration Changes in the Visual and Motor Cortices During Functional Stimulation: A Near-infrared Spectroscopy Study Wolf, M., Wolf, U., Toronov, V., Michalos, A., Paunescu, L.A., Choi, J.H., Gratton, E. Neuroimage., 2002, 16(3 Pt 1), 704-12. |
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On-line Optical Imaging of the Human Brain with 160-ms Temporal Resolution ranceschini, M.A., Toronov, V., Filiaci, M., Gratton, E., Fantini, S. Opt Express, 2000, 6(3), 49-57. |
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Near-infrared Study of Fluctuations in Cerebral Hemodynamics During Rest and Motor Stimulation: Temporal Analysis and Spatial Mapping Toronov, V., Franceschini, M.A., Filiaci, M., Fantini, S., Wolf, M., Michalos, A., Gratton, E. Med Phys., 2000, 27(4), 801-15. |
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Cerebral Hemodynamics Measured by Near-infrared Spectroscopy at Rest and During Motor Activation Franceschini, M.A., Fantini, S., Toronov, V., Filiaci, Gratton, E. Proc. Inter-Institute Workshop on In Vivo Optical Imaging at the NIH, 1999, 73-80. |
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Shades of Gray Matter: Noninvasive Optical Images of Human Brain Responses During Visual Stimulation Gratton, G., Corballis, P.M., Cho, E., Fabiani, M., Hood, D.C. Psychophysiology., 1995, 32(5), 505-9. |
Monitoring Attentional State and Stress Management
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Dynamic Filtering Improves Attentional State Prediction With fNIRS Harrivel, A.R., Weissman, D.H., Noll, D.C., Huppert, T., Peltier, S.J. Biomed Opt Express., 2016, 7(3), 979-1002. |
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Monitoring Attentional State With fNIRS Harrivel, A.R., Weissman, D.H., Noll, D.C., Peltier, S.J. Front Hum Neurosci., 2013, 7, 861. |
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Detection of Attentional State in Long-Distance Driving Settings Using Functional Near-Infrared Spectroscopy Tucker, M., Aubert, M.C., Sampaio, V., Clamann, M. & Cummings, M.L. 95th Annual Transportation Research Board Meeting, 2016. |
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Investigating Mental Workload Changes in a Long Duration Supervisory Control Task Boyer, M., Cummings, M., Spence, L., Solovey, E. Interacting with Computers, 2015, 27, 512-520. |
Brain Computer Interface
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A Hybrid NIRS-EEG System for Self-paced Brain Computer Interface With Online Motor Imagery Koo, B., Lee, H.G., Nam, Y., Kang, H., Koh, C.S., Shin, H.C., Choi, S. J Neurosci Methods., 2015, 244, 26-32. |
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Temporal Decoupling of Oxy- and Deoxy-Hemoglobin Hemodynamic Responses Detected by Functional Near-Infrared Spectroscopy (fNIRS) Tam, N.D., Zouridakis, G. Journal of Biomedical Engineering and Medical Imaging, 2014, 1(2). |
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Classification of Prefrontal Activity Due to Mental Arithmetic and Music Imagery Using Hidden Markov Models and Frequency Domain Near-infrared Spectroscopy Power, S.D., Falk, T.H., Chau, T. J Neural Eng., 2010, 7(2), 26002. |
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Single-trial Classification of NIRS Signals During Emotional Induction Tasks: Towards a Corporeal Machine Interface Tai, K., Chau, T. J Neuroeng Rehabil., 2009, 6, 39. |
Virtual Reality
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An Exploratory fNIRS Study With Immersive Virtual Reality: A New Method for Technical Implementation. Seraglia, B., Gamberini, L., Priftis, K., Scatturin, P., Martinelli, M., Cutini, S. Front Hum Neurosci., 2011, 5, 176. |
Technical Development
General Review
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Detection of Event-related Hemodynamic Response to Neuroactivation by Dynamic Modeling of Brain Activity. Aqil, M., Hong, K.S., Jeong, M.Y., Ge, S.S. Neuroimage., 2012, 63(1), 553-68. |
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Cortical Brain Imaging by Adaptive Filtering of NIRS Signals. Aqil, M., Hong, K.S., Jeong, M.Y., Ge, S.S. Neurosci Lett., 2012, 514(1), 35-41. |
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Review: Near Infrared Brain and Muscle Oximetry: From the Discovery to Current Applications Ferrari, M., Quaresima, V. JNIRS, 2012, 20, 1-14. |
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Review: Functional Near Infrared Optical Imaging in Cognitive Neuroscience: An Introductory Review Cutini, S., Basso Moro, S., Bisconti, S. JNIRS, 2012, 20, 75-92. |
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A Brief Review on the History of Human Functional Near-infrared Spectroscopy (fNIRS) Development and Fields of Application. Ferrari, M., Quaresima, V. Neuroimage., 2012, 63(2), 921-35. |
EROS
Cognitive Neuroscience
Auditory Cortex
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The Influence of Posterior Parietal Cortex on Extrastriate Visual Activity: A Concurrent TMS and Fast Optical Imaging Study. Parks, N.A., Mazzi, C., Tapia, E., Savazzi, S., Fabiani, M., Gratton, G., Beck, D.M. Neuropsychologia., 2015, 78, 153-8. |
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Preattentive Change Detection Using the Event-related Optical Signal. Tse, C.Y., Penney, T.B. IEEE Eng Med Biol Mag., 2007, 26(4), 52-8. |
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Event-related Optical Imaging Reveals the Temporal Dynamics of Right Temporal and Frontal Cortex Activation in Pre-attentive Change Detection. Tse, C.Y., Tien, K.R., Penney, T.B. Neuroimage., 2006, 29(1), 314-20. |
Motor Cortex
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The Event-related Optical Signal to Electrical Stimulation of the Median Nerve. Maclin, E.L., Low, K.A., Sable, J.J., Fabiani, M., Gratton, G. Neuroimage., 2004, 21(4), 1798-804. |
Visual Cortex
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Fast Optical Signal in Visual Cortex: Improving Detection by General Linear Convolution Model Chiarelli, A.M., ChiarelliDi Vacri, A., Romani, G.L., Merla, A. Neuroimage., 2013, 66, 194-202. |
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Time Course of Activation of Human Occipital Cortex Measured with the Event-Related Optical Signal (EROS) Gratton, G., Low, K.A., Maclin, E.L., Brumback, C.R., Gordon, B., Fabiani, M. Biomedical Optics, 2006. |
Frontal Cortex
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Time Course of Activation of Human Occipital Cortex Measured with the Event-Related Optical Signal (EROS) Gratton, G., Low, K.A., Maclin, E.L., Brumback, C.R., Gordon, B., Fabiani, M. Biomedical Optics, 2006. |
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Fast Optical Imaging of Frontal Cortex During Active and Passive Oddball Tasks. Low, K.A., Leaver, E., Kramer, A.F., Fabiani, M., Gratton, G. Psychophysiology., 2006, 43(2), 127-36. |
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Dynamic Brain Imaging: Event-Related Optical Signal (EROS) Measures of the Time Course and Localization of Cognitive-Related Activity Gratton, G., Fabiani, M. Psychosonomic Bulletin & Review, 1998, 5, 535-563. |
Language Center
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Cortical Dynamics of Semantic Processing During Sentence Comprehension: Evidence From Event-related Optical Signals. Huang, J., Wang, S., Jia, S., Mo, D., Chen, H.C. PLoS One., 2013, 8(8), e70671. |
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Imaging Cortical Dynamics of Language Processing With the Event-related Optical Signal. Tse, C.Y., Lee, C.L., Sullivan, J., Garnsey, S.M., Dell, G.S., Fabiani, M., Gratton, G. Proc Natl Acad Sci U S A., 2007, 104(43), 17157-62. |
Technical Development
General Review
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Fast Optical Signals: Principles, Methods, and Experimental Results Gratton, G., Fabiani, M. In Vivo Optical Imaging of Brain Function, 2009, 2, 223-247. |
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Optical Imaging Gratton, G., Fabiani, M. Neuroergonomics: The Brain at Work, 2007, 65-81. |
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Biosignal Processing Gratton, G. Handbook of Psychophysiology, 2007, 3, 834-858. |
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Optical Imaging of the Intact Human Brain Fabiani, M., Schmorrow, D.D., Gratton, G. IEEE Eng Med Biol Mag., 2007, 26(4), 14-6. |
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Lagged Covariance Structure Models for Studying Functional Connectivity in the Brain Rykhlevskaia, E., Fabiani, M., Gratton, G. Neuroimage., 2006, 30(4), 1203-18. |
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Seeing Right Through You: Applications of Optical Imaging to the Study of the Human Brain Gratton, G., Fabiani, M., Elbert, T., Rockstroh, B. Psychophysiology, 2003, 40(4), 487-491. |
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Fast Cerebral Functional Signal in the 100-ms Range Detected in the Visual Cortex by Frequency-domain Near-infrared Spectrophotometry Wolf, M., Wolf, U., Choi, J.H., Toronov, V., Paunescu, L.A., Michalos, A., Gratton, E. Psychophysiology., 2003, 40(4), 521-8. |
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Shedding Light on Brain Function: The Event-related Optical Signal. Gratton, G., Fabiani, M. Trends Cogn Sci., 2001, 5(8), 357-363. |
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The Event-Related Optical Signal: A New Tool for Studying Brain Function. Gratton, G., Fabiani, M. Int J Psychophysiol., 2001, 42(2), 109-21. |
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Fast Cerebral Functional Signals in the 100 ms Range Detected by Frequency-domain Near-infrared Spectroscopy Wolf, M., Wolf, U., Choi, J.H., Toronov, V., Paunescu, L.A., Michalos, A., Gratton, E. NeuroImage, 2000, 11(5), 521-8. |
MetaOx
Combined NIRS-DCS
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Cerebral Oxygen Metabolism in Neonates With Congenital Heart Disease Quantified by MRI and Optics. Jain, V., Buckley, E.M., Licht, D.J., Lynch, J.M., Schwab, P.J., Naim, M.Y., Lavin, N.A., Nicolson, S.C., Montenegro, L.M., Yodh, A.G., Wehrli, F.W. J Cereb Blood Flow Metab., 2014, 34(3), 380-8. |
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Non-invasive Optical Measurement of Cerebral Metabolism and Hemodynamics in Infants. Lin, P.Y., Roche-Labarbe, N., Dehaes, M., Carp, S., Fenoglio, A., Barbieri, B., Hagan, K., Grant, P.E., Franceschini, M.A. J Vis Exp., 2013, (73), e4379. |
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Regional and Hemispheric Asymmetries of Cerebral Hemodynamic and Oxygen Metabolism in Newborns. Lin, P.Y., Roche-Labarbe, N., Dehaes, M., Fenoglio, A., Grant, P.E., Franceschini, M.A. Cereb Cortex., 2013, 23(2), 339-48. |
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Near-infrared Spectroscopy Assessment of Cerebral Oxygen Metabolism in the Developing Premature Brain. Roche-Labarbe, N., Fenoglio, A., Aggarwal, A., Dehaes, M., Carp, S.A., Franceschini, M.A., Grant, P.E. J Cereb Blood Flow Metab., 2012, 32(3), 481-8. |
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Influences of Tissue Absorption and Scattering on Diffuse Correlation Spectroscopy Blood Flow Measurements
Irwin D., Dong, L., Shang, Y., Cheng, R., Kudrimoti, M., Stevens, S.D., Yu, G. Biomedical Optics Express, 2011, 2(7), 1969-85. |
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Optical Measurement of Cerebral Hemodynamics and Oxygen Metabolism in Neonates With Congenital Heart Defects. Durduran, T., Zhou, C., Buckley, E.M., Kim, M.N., Yu, G., Choe, R., Gaynor, J.W., Spray, T.L., Durning, S.M., Mason, S.E., Montenegro, L.M., Nicolson, S.C., Zimmerman, R.A., Putt, M.E., Wang, J., Greenberg, J.H., Detre, J.A., Yodh, A.G., Licht, D.J. J Biomed Opt., 2010, 15(3), 037004. |
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Noninvasive Optical Measures of CBV, StO(2), CBF Index, and rCMRO(2) in Human Premature Neonates' Brains in the First Six Weeks of Life. Roche-Labarbe, N., Carp, S.A., Surova, A., Patel, M., Boas, D.A., Grant, P.E., Franceschini, M.A. Hum Brain Mapp., 2010, 31(3), 341-52. |
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Increased Cerebral Blood Volume and Oxygen Consumption in Neonatal Brain Injury. Grant, P.E., Roche-Labarbe, N., Surova, A., Themelis, G., Selb, J., Warren, E.K., Krishnamoorthy, K.S., Boas, D.A., Franceschini, M.A. J Cereb Blood Flow Metab., 2009, 29(10), 1704-13. |
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Assessment of Infant Brain Development With Frequency-domain Near-infrared Spectroscopy. Franceschini, M.A., Thaker, S., Themelis, G., Krishnamoorthy, K.K., Bortfeld, H., Diamond, S.G., Boas, D.A., Arvin, K., Grant, P.E. Pediatr Res., 2007, 61(5 Pt 1), 546-51. |
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Developmental Changes of Optical Properties in Neonates Determined by Near-infrared Time-resolved Spectroscopy. Ijichi, S., Kusaka, T., Isobe, K., Okubo, K., Kawada, K., Namba, M., Okada, H., Nishida, T., Imai, T., Itoh, S. Pediatr Res., 2005, 58(3), 568-73. |
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In Vivo Cerebrovascular Measurement Combining Diffuse Near-infrared Absorption and Correlation Spectroscopies. Cheung, C., Culver, J.P., Takahashi, K., Greenberg, J.H., Yodh, A.G. Phys Med Biol., 2001, 46(8), 2053-65. |
Validation of NIRS-DCS
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Validation of Diffuse Correlation Spectroscopic Measurement of Cerebral Blood Flow Using Phase-encoded Velocity Mapping Magnetic Resonance Imaging. Buckley, E.M., Hance, D., Pawlowski, T., Lynch, J., Wilson, F.B., Mesquita, R.C., Durduran, T., Diaz, L.K., Putt, M.E., Licht, D.J., Fogel, M.A., Yodh, A.G. J Biomed Opt., 2012, 17(3), 037007. |
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Validation of Diffuse Correlation Spectroscopy Measurements of Rodent Cerebral Blood Flow With Simultaneous Arterial Spin Labeling MRI; Towards MRI-optical Continuous Cerebral Metabolic Monitoring. Carp, S.A., Dai, G.P., Boas, D.A., Franceschini, M.A., Kim, Y.R. Biomed Opt Express., 2010, 1(2), 553-565. |
DCS
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Diffuse Correlation Spectroscopy for Measurement of Cerebral Blood Flow: Future Prospects. Buckley, E.M., Parthasarathy, A.B., Grant, P.E., Yodh, A.G., Franceschini, M.A. Neurophotonics., 2014, 1(1), pii 011009. |
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Direct Measurement of Tissue Blood Flow and Metabolism With Diffuse Optics. Mesquita, R.C., Durduran, T., Yu, G., Buckley, E.M., Kim, M.N., Zhou, C., Choe, R., Sunar, U., Yodh, A.G. Philos Trans A Math Phys Eng Sci., 2011, 369(1955), 4390-406. |
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Influences of Tissue Absorption and Scattering on Diffuse Correlation Spectroscopy Blood Flow Measurements Irwin, D., Dong, L., Shang, Y., Cheng, R., Kudrimoti, M., Stevens, S.D., Yu, G. Biomed Opt Express., 2011, 2(7). |
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Spatially varying dynamical properties of turbid media probed with diffusing temporal light correlation Boas, D.A., Yodh, A.G. J. Opt. Soc. Am. A, 1997, 14(1), 192-215. |
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Scattering and Imaging with Diffusing Temporal Field Correlations Boas, D.A., Yodh, A.G. Physical Review Letters, 1995, 75(9), 1855-1859. |
